4.6 Article

The prokaryotic and fungal communities of oat rhizosphere responded contrastingly to different irrigation regimes at pre- and post-anthesis stages

Related references

Note: Only part of the references are listed.
Article Agronomy

Drip irrigation mode affects tomato yield by regulating root-soil-microbe interactions

Jingwei Wang et al.

Summary: The study demonstrates that different drip irrigation methods can influence root-soil-microbe interactions, thereby regulating tomato yield. SDI treatment had the most significant impact on root-soil-microbe interactions and resulted in the highest yield.

AGRICULTURAL WATER MANAGEMENT (2022)

Article Soil Science

Drivers of diazotroph community structure and co-occurrence in a Northern Great Plains pulse crop rotation system

Alexander B. Alleman et al.

Summary: This study in Montana investigated the changes in soil microbiome structure in pulse-cereal rotation systems, revealing the significant impact of irrigation on soil microbial community structure, with more robust diazotrophic communities in dryland soils; Keystone diazotrophic taxa were identified in different environments through co-occurrence networks.

APPLIED SOIL ECOLOGY (2021)

Article Soil Science

Contribution of anecic and epigeic earthworms to biological control of Fusarium graminearum in wheat straw

Gabriella Jorge-Escudero et al.

Summary: Earthworms can contribute to plant health indirectly by improving soil properties and directly by suppressing plant pathogens. Fusarium Head Blight, caused by Fusarium graminearum, is a significant cereal disease affecting yield and grain quality globally. Earthworms can reduce F. graminearum inoculum by competition, growth inhibition, and burying crop residue. Anecic and epigeic earthworms show potential for biological control of F. graminearum in wheat straw.

APPLIED SOIL ECOLOGY (2021)

Article Soil Science

The stronger impact of inorganic nitrogen fertilization on soil bacterial community than organic fertilization in short-term condition

Meiling Zhang et al.

Summary: Geographic location plays a major role in shaping the structure of soil bacterial communities, while the impact of sampling season and fertilization practice is relatively minor. Inorganic nitrogen fertilizer has a greater impact on bacterial community structure than organic nitrogen fertilizer, but the specific changes depend on geographic location.

GEODERMA (2021)

Article Ecology

Environmental stress destabilizes microbial networks

Damian J. Hernandez et al.

Summary: Research shows that natural microbiomes under persistent stress exhibit characteristics of instability, with declines in microbial diversity and changes in network properties of stable communities. Pathogenic taxa decrease while oligotrophs and mutualists increase along stress gradients, impacting the negative:positive cohesion and potentially destabilizing microbiomes and their ecosystem services.

ISME JOURNAL (2021)

Article Engineering, Environmental

Geochemical, metagenomic, and physiological characterization of the multifaceted interaction between microbiome of an arsenic contaminated groundwater and aquifer sediment

Balaram Mohapatra et al.

Summary: The study investigated the interactions between groundwater microbiome and arsenic-rich aquifer sediment of the Bengal basin through microcosm incubations. It identified key microorganisms and their specific interactions with arsenic-bearing minerals under different conditions. The results showed that the microbiome catalyzed significant alterations in arsenic-bearing mineral phases, leading to substantial changes in geochemistry and release of arsenic and iron.

JOURNAL OF HAZARDOUS MATERIALS (2021)

Article Soil Science

Seasonal variation of diversity and co-occurrence patterns of arbuscular mycorrhizal fungal communities in mixed broadleaf-conifer forests

Li Ji et al.

Summary: This study found that seasonal variation has significant impacts on forest soil AM fungal communities, with forest type, soil pH, microbial biomass, and nitrogen, phosphorus content being significantly affected by seasonal changes. Diversity indices of mixed forest varied across different seasons, and the co-occurrence network and keystone taxa among AM fungi can change in response to environmental filtering due to mixed management in different seasons.

APPLIED SOIL ECOLOGY (2021)

Article Soil Science

Responses of the sugarcane rhizosphere microbiota to different levels of water stress

Leticia Bianca Pereira et al.

Summary: The study revealed that water stress can increase organic acid exudation from sugarcane roots and alter microbial gene expression. Under water stress conditions, genes associated with certain microbial genera showed decreased expression, while others related to specific functions exhibited increased expression.

APPLIED SOIL ECOLOGY (2021)

Article Agronomy

Baseline sensitivity of Fusarium graminearum from wheat, corn, dry bean and soybean to pydiflumetofen in Michigan, USA

Mikaela Breunig et al.

Summary: A new Succinate Dehydrogenase Inhibitor (SDHI) fungicide has been registered for managing Fusarium Head Blight of wheat and corn ear rot by Syngenta in Switzerland. Sensitivity of Fusarium graminearum isolates from different crops in Michigan to this new active ingredient was determined, showing inhibition of mycelial growth and spore germination in vitro. This study establishes baseline sensitivity values for Michigan populations of F. graminearum before widespread application of the chemistry on commercial fields.

CROP PROTECTION (2021)

Article Environmental Sciences

Compositional changes of sedimentary microbes in the Yangtze River Estuary and their roles in the biochemical cycle

Lili Liu et al.

Summary: The Yangtze River Estuary and the adjacent East China Sea are affected by both anthropogenic activities and environmental factors, influencing the responses of microbes in surface sediment. Factors such as ocean currents, sediment density, nutrients, sulfate, and salinity play key roles in shaping microbial communities. Different regions have different dominant bacteria, influenced by factors such as sediment density in coastal areas and anthropogenic discharge in the ocean.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Agriculture, Multidisciplinary

Microbial assembly and association network in watermelon rhizosphere after soil fumigation for Fusarium wilt control

An-Hui Ge et al.

Summary: The study found that soil fumigation significantly reduced the incidence of Fusarium wilt and pathogen abundance, as well as decreased soil microbial metabolic activity, fungal biomass, and diversity. Bacterial communities recovered quickly from fumigation, while fungal suppression lasted longer.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2021)

Article Agriculture, Multidisciplinary

Wheat rhizosphere fungal community is affected by tillage and plant growth

Yuze Li et al.

Summary: The study found that agricultural management practices can influence the structure and function of the rhizosphere fungal community, with the dynamics of plant traits during the growth process potentially driving changes in the rhizosphere fungal community.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2021)

Article Soil Science

Detrital subsidy alters the soil invertebrate community and reduces infection of winter wheat seedlings by Fusarium wilt

Anton A. Goncharov et al.

Summary: The study shows that promoting detrital food webs can effectively control pathogenic Fusarium species and increase crop productivity. Adding detrital subsidy can increase the population of predatory mites and Enchytraeidae, thereby reducing the infection rate on winter wheat.

APPLIED SOIL ECOLOGY (2021)

Article Environmental Sciences

Increasing aridity shapes beta diversity and the network dynamics of the belowground fungal microbiome associated with Opuntia ficus-indica

Mahmoud Gargouri et al.

Summary: The effects of aridity on fungal communities associated with prickly pear cactus trees along an aridity gradient were studied. It was found that there were differences in beta diversity between rhizosphere and endosphere, with higher abundance of major phyla in rhizosphere. Arbuscular endomycorrhizal colonization was highest in humid climate and decreased under lower arid conditions, while increased aridity correlated with increased connectivity of soil microbial-root fungal networks in arid soils. Different fungal hubs in each bioclimatic zone sculpted the fungal microbiome network structure.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Environmental Sciences

Soil moisture threshold in controlling above- and belowground community stability in a temperate desert of Central Asia

Yangyang Jia et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2020)

Article Ecology

Litter composition has stronger influence on the structure of soil fungal than bacterial communities

Jemaneh Z. Habtewold et al.

EUROPEAN JOURNAL OF SOIL BIOLOGY (2020)

Article Ecology

Rhizosphere microbial diversity and community dynamics during potato cultivation

Qian Hou et al.

EUROPEAN JOURNAL OF SOIL BIOLOGY (2020)

Review Multidisciplinary Sciences

Harnessing rhizosphere microbiomes for drought-resilient crop production

Franciska T. de Vries et al.

SCIENCE (2020)

Article Biochemistry & Molecular Biology

Fungal communities differentially respond to warming and drought in tropical grassland soil

Tassio Brito de Oliveira et al.

MOLECULAR ECOLOGY (2020)

Article Microbiology

Water management and phenology influence the root-associated rice field microbiota

Matteo Chialva et al.

FEMS MICROBIOLOGY ECOLOGY (2020)

Review Ecology

Surplus Carbon Drives Allocation and Plant-Soil Interactions

Cindy E. Prescott et al.

TRENDS IN ECOLOGY & EVOLUTION (2020)

Article Plant Sciences

Plants of Distinct Successional Stages Have Different Strategies for Nutrient Acquisition in an Atlantic Rain Forest Ecosystem

Artur Berbel Lirio Rondina et al.

INTERNATIONAL JOURNAL OF PLANT SCIENCES (2019)

Article Biotechnology & Applied Microbiology

Meta-network: optimized species-species network analysis for microbial communities

Pengshuo Yang et al.

BMC GENOMICS (2019)

Article Soil Science

Effects of past and current drought on the composition and diversity of soil microbial communities

Catherine Preece et al.

SOIL BIOLOGY & BIOCHEMISTRY (2019)

Review Plant Sciences

Drought Stress and Root-Associated Bacterial Communities

Dan Naylor et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Soil Science

Water stress history and wheat genotype modulate rhizosphere microbial response to drought

Hamed Azarbad et al.

SOIL BIOLOGY & BIOCHEMISTRY (2018)

Article Multidisciplinary Sciences

Soil bacterial networks are less stable under drought than fungal networks

Franciska T. de Vries et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle

K. Dimitri Kits et al.

NATURE (2017)

Article Agriculture, Multidisciplinary

Climate effects on crop yields in the Northeast Farming Region of China during 1961-2010

X. G. Yin et al.

JOURNAL OF AGRICULTURAL SCIENCE (2016)

Review Biochemistry & Molecular Biology

Arbuscular mycorrhizal fungal responses to abiotic stresses: A review

Ingrid Lenoir et al.

PHYTOCHEMISTRY (2016)

Article Multidisciplinary Sciences

Decoupling function and taxonomy in the global ocean microbiome

Stilianos Louca et al.

SCIENCE (2016)

Article Agriculture, Multidisciplinary

Climate effects on crop yields in the Northeast Farming Region of China during 1961-2010

X. G. Yin et al.

JOURNAL OF AGRICULTURAL SCIENCE (2016)

Article Multidisciplinary Sciences

The ecology of the microbiome: Networks, competition, and stability

Katharine Z. Coyte et al.

SCIENCE (2015)

Review Soil Science

Microbial hotspots and hot moments in soil: Concept & review

Yakov Kuzyakov et al.

SOIL BIOLOGY & BIOCHEMISTRY (2015)

Article Biochemical Research Methods

STAMP: statistical analysis of taxonomic and functional profiles

Donovan H. Parks et al.

BIOINFORMATICS (2014)

Article Plant Sciences

Natural rice rhizospheric microbes suppress rice blast infections

Carla Spence et al.

BMC PLANT BIOLOGY (2014)

Article Ecology

Rhizosphere microbiome assemblage is affected by plant development

Jacqueline M. Chaparro et al.

ISME JOURNAL (2014)

Article Multidisciplinary Sciences

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest

Steven W. Kembel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Environmental Sciences

Network topology reveals high connectance levels and few key microbial genera within soils

Manoeli Lupatini et al.

FRONTIERS IN ENVIRONMENTAL SCIENCE (2014)

Review Microbiology

Going back to the roots: the microbial ecology of the rhizosphere

Laurent Philippot et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Biodiversity Conservation

Drought-resistant fungi control soil organic matter decomposition and its response to temperature

J. C. Yuste et al.

GLOBAL CHANGE BIOLOGY (2011)

Review Ecology

Plant nutrient-acquisition strategies change with soil age

Hans Lambers et al.

TRENDS IN ECOLOGY & EVOLUTION (2008)

Article Multidisciplinary Sciences

The modularity of pollination networks

Jens M. Olesen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Structural asymmetry and the stability of diverse food webs

Neil Rooney et al.

NATURE (2006)

Article Agriculture, Multidisciplinary

Risk assessment of drought disaster in the maize-growing region of Songliao Plain, China

JQ Zhang

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2004)

Article Multidisciplinary Sciences

Stability in real food webs: Weak links in long loops

AM Neutel et al.

SCIENCE (2002)