4.6 Article

Differential Genetic Strategies of Burkholderia vietnamiensis and Paraburkholderia kururiensis for Root Colonization of Oryza sativa subsp. japonica and O. sativa subsp. indica, as Revealed by Transposon Mutagenesis Sequencing

Related references

Note: Only part of the references are listed.
Review Environmental Sciences

Deciphering bacterial mechanisms of root colonization

Hayley E. Knights et al.

Summary: Bacterial colonization of the rhizosphere is influenced by plants through modulation of root exudates and immune response, leading to a gradient of reduced bacterial diversity towards the root. Bacteria-bacteria interactions also play a significant role in bacterial persistence and root colonization.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2021)

Article Multidisciplinary Sciences

Lifestyle adaptations of Rhizobium from rhizosphere to symbiosis

Rachel M. Wheatley et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Microbiology

Diverse Bacterial Genes Modulate Plant Root Association by Beneficial Bacteria

Fernanda Plucani do Amaral et al.

Article Plant Sciences

Identification by Tn-seq of Dickeya dadantii genes required for survival in chicory plants

Kevin Royet et al.

MOLECULAR PLANT PATHOLOGY (2019)

Article Genetics & Heredity

Evaluation of INSeq To Identify Genes Essential for Pseudomonas aeruginosa PGPR2 Corn Root Colonization

Ramamoorthy Sivakumar et al.

G3-GENES GENOMES GENETICS (2019)

Article Biotechnology & Applied Microbiology

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

Jingying Zhang et al.

NATURE BIOTECHNOLOGY (2019)

Article Multidisciplinary Sciences

Genome-wide identification of Pseudomonas syringae genes required for fitness during colonization of the leaf surface and apoplast

Tyler C. Helmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Microbiology

Key Players and Individualists of Cyclic-di-GMP Signaling in Burkholderia cenocepacia

Anja M. Richter et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Genetics & Heredity

Genomic features of bacterial adaptation to plants

Asaf Levy et al.

NATURE GENETICS (2018)

Article Biochemistry & Molecular Biology

Genome-wide identification of bacterial plant colonization genes

Benjamin J. Cole et al.

PLOS BIOLOGY (2017)

Article Biochemical Research Methods

TnseqDiff: identification of conditionally essential genes in transposon sequencing studies

Lili Zhao et al.

BMC BIOINFORMATICS (2017)

Review Biochemistry & Molecular Biology

Aim, Load, Fire: The Type VI Secretion System, a Bacterial Nanoweapon

Francesca R. Cianfanelli et al.

TRENDS IN MICROBIOLOGY (2016)

Article Microbiology

Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS

Yee-Chin Wong et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea

Ana Laura Grazziotin et al.

FEBS JOURNAL (2015)

Article Biochemistry & Molecular Biology

Plant-Influenced Gene Expression in the Rice Endophyte Burkholderia kururiensis M130

Bruna G. Coutinho et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2015)

Article Multidisciplinary Sciences

Structure, variation, and assembly of the root-associated microbiomes of rice

Joseph Edwards et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemical Research Methods

TRANSIT - A Software Tool for Himar1 TnSeq Analysis

Michael A. DeJesus et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Immunology

Comprehensive identification of virulence factors required for respiratory melioidosis using Tn-seq mutagenesis

Maria G. Gutierrez et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2015)

Article Genetics & Heredity

ARTIST: High-Resolution Genome-Wide Assessment of Fitness Using Transposon-Insertion Sequencing

Justin R. Pritchard et al.

PLOS GENETICS (2014)

Review Ecology

Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia

Zulma Rocio Suarez-Moreno et al.

MICROBIAL ECOLOGY (2012)

Article Biochemical Research Methods

Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms

Tim van Opijnen et al.

NATURE METHODS (2009)

Article Plant Sciences

Gas chromatography-mass spectrometry associated global analysis of rice root exudates under aseptical conditions

Katsumasa Suzuki et al.

SOIL SCIENCE AND PLANT NUTRITION (2009)

Article Multidisciplinary Sciences

Endophytic colonization of rice (Oryza sativa L.) by the diazotrophic bacterium Burkholderia kururiensis and its ability to enhance plant growth

Katherine A. Mattos et al.

ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS (2008)

Review Microbiology

Diversity and occurrence of Burkholderia spp. in the natural environment

Stephane Compant et al.

FEMS MICROBIOLOGY REVIEWS (2008)

Review Microbiology

Determination of the core of a minimal bacterial gene set

R Gil et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2004)

Article Biochemistry & Molecular Biology

Protein disulfide bond formation in the cytoplasm during oxidative stress

RC Cumming et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Review Biotechnology & Applied Microbiology

Biotin in microbes, the genes involved in its biosynthesis, its biochemical role and perspectives for biotechnological production

WR Streit et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2003)

Review Biochemistry & Molecular Biology

Biosynthesis of cobalamin (vitamin B12):: a bacterial conundrum

E Raux et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2000)