4.2 Article

Next-generation sequencing and analysis of consecutive patients referred for connective tissue disorders

Journal

AMERICAN JOURNAL OF MEDICAL GENETICS PART A
Volume 188, Issue 10, Pages 3016-3023

Publisher

WILEY
DOI: 10.1002/ajmg.a.62905

Keywords

bioinformatics; consecutive patient cohort; Ehlers-Danlos syndrome; gene variants and classification; heritable connective tissue disorders; next-generation sequencing (NGS)

Funding

  1. National Institute of Child Health and Human Development [HD02528]

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The study identified 117 gene variants in a cohort of 100 patients using next-generation sequencing, with 10 variants classified as pathogenic or likely pathogenic. Collagen-related protein gene variants were the most frequent, and joint hypermobility was the most common clinical finding among patients with heritable connective tissue disorders.
Heritable connective tissue disorders (HCTDs) consist of a wide array of genetic disorders such as Ehlers-Danlos syndrome, Marfan syndrome, and osteogenesis imperfecta. The diagnosis relies on clinical presentation and family history to guide genetic testing with next-generation sequencing (NGS) for identification of gene variants in HCTDs. NGS was performed on a cohort of 100 consecutive, unrelated patients referred for a connective tissue disorder at Fulgent Genetics, an accredited commercial laboratory. One hundred seventeen gene variants were found in 76 patients with 10 recognized pathogenic or likely pathogenic variants seen in nine patients. The remaining variants were grouped as unknown clinical significance with 36 meeting three out of four pathogenicity criteria, or potentially pathogenic, as defined in our study in 33 patients. They were judged as potentially pathogenic for clinical care and management with disease surveillance based on the specific gene and phenotypic presentation. Gene variants in collagen-related proteins were the most frequent with ZNF469 and ADAMTSL2 variants most often identified. Joint hypermobility was the most frequent clinical finding. Variants were found in 76% of patients who had distinct clinical features of a HCTD. The data were stratified to provide insight into frequency and types of variants, their classification, and clinical manifestations.

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