4.6 Article

Revving an Engine of Human Metabolism: Activity Enhancement of Triosephosphate Isomerase via Hemi-Phosphorylation

Related references

Note: Only part of the references are listed.
Article Physics, Atomic, Molecular & Chemical

Reassembling protein complexes after controlled disassembly by top-down mass spectrometry in native mode

Luis F. Schachner et al.

Summary: The combined use of electrospray ionization in native mode with top-down mass spectrometry enhances the study of protein complexes and bioassemblies by providing comprehensive information in a single experiment. This approach offers insights into intact mass, subunit masses, cofactors, and fragment ion masses, which are essential for characterizing proteoforms. The tutorial provides a decision-tree for analyzing nTDMS experiments and emphasizes key features for experimental design and data processing using different software tools.

INTERNATIONAL JOURNAL OF MASS SPECTROMETRY (2021)

Review Biochemistry & Molecular Biology

Engineering molecular translation systems

Camila Kofman et al.

Summary: Advancements in molecular translation systems have opened up exciting opportunities in synthetic biology and chemistry by allowing the incorporation of non-canonical amino acids in cell-based and cell-free systems, improving efficiency through engineering processes. Future innovations will deepen the understanding of molecular translation and pave the way for polymers with unprecedented structures and functions.

CELL SYSTEMS (2021)

Article Endocrinology & Metabolism

Nuclear dihydroxyacetone phosphate signals nutrient sufficiency and cell cycle phase to global histone acetylation

Jiao-Jiao Zhang et al.

Summary: The glycolytic enzyme TPI1 plays a crucial role in regulating nuclear acetate levels, which in turn affect global histone acetylation.

NATURE METABOLISM (2021)

Article Biochemistry & Molecular Biology

Pfam: The protein families database in 2021

Jaina Mistry et al.

Summary: The Pfam database has recently added a large number of protein families and domains, made revisions for COVID-19 research, and introduced Pfam-B as a supplement. These updates and improvements can help researchers classify protein sequences more effectively and conduct related studies.

NUCLEIC ACIDS RESEARCH (2021)

Review Genetics & Heredity

Cell-free gene expression: an expanded repertoire of applications

Adam D. Silverman et al.

NATURE REVIEWS GENETICS (2020)

Article Biochemical Research Methods

High throughput discovery of functional protein modifications by Hotspot Thermal Profiling

Jun X. Huang et al.

NATURE METHODS (2019)

Article Biochemical Research Methods

The EVcouplings Python framework for coevolutionary sequence analysis

Thomas A. Hopf et al.

BIOINFORMATICS (2019)

Review Biochemistry & Molecular Biology

Medical and Veterinary Importance of the Moonlighting Functions of Triosephosphate Isomerase

Monica Rodriguez-Bolanos et al.

CURRENT PROTEIN & PEPTIDE SCIENCE (2019)

Article Biochemistry & Molecular Biology

UniProt: a worldwide hub of protein knowledge

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Biochemistry & Molecular Biology

Illuminating the dark phosphoproteome

Elise J. Needham et al.

SCIENCE SIGNALING (2019)

Article Biochemistry & Molecular Biology

A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli

Benjamin J. Des Soye et al.

CELL CHEMICAL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Top-down characterization of endogenous protein complexes with native proteomics

Owen S. Skinner et al.

NATURE CHEMICAL BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Repurposed HisC Aminotransferases Complete the Biosynthesis of Some Methanobactins

Yun Ji Park et al.

BIOCHEMISTRY (2018)

Article Biochemistry & Molecular Biology

Differential effects on enzyme stability and kinetic parameters of mutants related to human triosephosphate isomerase deficiency

Nallely Cabrera et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2018)

Article Multidisciplinary Sciences

The biosynthesis of methanobactin

Grace E. Kenney et al.

SCIENCE (2018)

Article Biochemistry & Molecular Biology

Four Key Steps Control Glycolytic Flux in Mammalian Cells

Lukas Bahati Tanner et al.

CELL SYSTEMS (2018)

Review Chemistry, Multidisciplinary

A Bird's-Eye View of Enzyme Evolution: Chemical, Physicochemical, and Physiological Considerations

Dan Davidi et al.

CHEMICAL REVIEWS (2018)

Review Biochemistry & Molecular Biology

A guide to the effects of a large portion of the residues of triosephosphate isomerase on catalysis, stability, druggability, and human disease

Vanesa Olivares-Illana et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2017)

Article Biochemistry & Molecular Biology

Triosephosphate isomerase 1 suppresses growth, migration and invasion of hepatocellular carcinoma cells

Hao Jiang et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2017)

Article Biochemical Research Methods

An informatic framework for decoding protein complexes by top-down mass spectrometry

Owen S. Skinner et al.

NATURE METHODS (2016)

Article Biochemical Research Methods

ProSight Lite: Graphical software to analyze top-down mass spectrometry data

Ryan T. Fellers et al.

PROTEOMICS (2015)

Article Multidisciplinary Sciences

Robust production of recombinant phosphoproteins using cell-free protein synthesis

Javin P. Oza et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

High-throughput preparation methods of crude extract for robust cell-free protein synthesis

Yong-Chan Kwon et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

Inhibition of triosephosphate isomerase by phosphoenolpyruvate in the feedback-regulation of glycolysis

Nana-Maria Gruening et al.

OPEN BIOLOGY (2014)

Article Chemistry, Analytical

From Protein Complexes to Subunit Backbone Fragments: A Multi-stage Approach to Native Mass Spectrometry

Mikhail E. Belov et al.

ANALYTICAL CHEMISTRY (2013)

Article Biochemistry & Molecular Biology

The E104D mutation increases the susceptibility of human triosephosphate isomerase to proteolysis. Asymmetric cleavage of the two monomers of the homodimeric enzyme

Ignacio De la Mora-De La Mora et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2013)

Letter Biochemical Research Methods

Proteoform: a single term describing protein complexity

Lloyd M. Smith et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels

Karel Berka et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

A Mechanism for the Evolution of Phosphorylation Sites

Samuel M. Pearlman et al.

Article Biochemistry & Molecular Biology

Oxidative stress-induced oligomerization inhibits the activity of the non-receptor tyrosine phosphatase STEP61

Ishani Deb et al.

JOURNAL OF NEUROCHEMISTRY (2011)

Review Biochemistry & Molecular Biology

Triosephosphate isomerase: a highly evolved biocatalyst

R. K. Wierenga et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2010)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Programming cells by multiplex genome engineering and accelerated evolution

Harris H. Wang et al.

NATURE (2009)

Article Biochemical Research Methods

Enzymatic assembly of DNA molecules up to several hundred kilobases

Daniel G. Gibson et al.

NATURE METHODS (2009)

Article Biochemistry & Molecular Biology

An integrated cell-free metabolic platform for protein production and synthetic biology

Michael C. Jewett et al.

MOLECULAR SYSTEMS BIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Mimicking the Escherichia coli cytoplasmic environment activates long-lived and efficient cell-free protein synthesis

MC Jewett et al.

BIOTECHNOLOGY AND BIOENGINEERING (2004)

Article Biochemistry & Molecular Biology

Increased formation of methylglyoxal and protein glycation, oxidation and nitrosation in triosephosphate isomerase deficiency

N Ahmed et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2003)

Article Biochemistry & Molecular Biology

Control of the reactivation kinetics of homodimeric triosephosphate isomerase from unfolded monomers

V Zomosa-Signoret et al.

BIOCHEMISTRY (2003)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

Tiny TIM: A small, tetrameric, hyperthermostable triosephosphate isomerase

H Walden et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Review Pharmacology & Pharmacy

Glycolysis as a target for the design of new anti-trypanosome drugs

CLM Verlinde et al.

DRUG RESISTANCE UPDATES (2001)

Review Hematology

Triosephosphate isomerase deficiency: historical perspectives and molecular aspects

AS Schneider

BEST PRACTICE & RESEARCH CLINICAL HAEMATOLOGY (2000)