4.5 Article

Fecal DNA Virome Is Associated with the Development of Colorectal Neoplasia in a Murine Model of Colorectal Cancer

Related references

Note: Only part of the references are listed.
Article Gastroenterology & Hepatology

Alterations in the Gut Virome in Obesity and Type 2 Diabetes Mellitus

Keli Yang et al.

Summary: This study reveals that obese individuals, especially those with T2DM, have decreased gut viral richness and diversity compared to lean controls. There are altered viral taxonomic composition and weakened viral-bacterial correlations in obesity, and the gut virome may play a role in the development of obesity and T2DM.

GASTROENTEROLOGY (2021)

Article Oncology

Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries

Hyuna Sung et al.

Summary: The global cancer burden in 2020 saw an estimated 19.3 million new cancer cases and almost 10.0 million cancer deaths. Female breast cancer surpassed lung cancer as the most commonly diagnosed cancer, while lung cancer remained the leading cause of cancer death. These trends are expected to rise in 2040, with transitioning countries experiencing a larger increase compared to transitioned countries due to demographic changes and risk factors associated with globalization and a growing economy. Efforts to improve cancer prevention measures and provision of cancer care in transitioning countries will be crucial for global cancer control.

CA-A CANCER JOURNAL FOR CLINICIANS (2021)

Article Biochemical Research Methods

Multivariable association discovery in population-scale meta-omics studies

Himel Mallick et al.

Summary: The paper introduces a statistical model called MaAsLin 2 for multivariable associations in population-scale microbial community studies, which has been extensively validated. The authors highlight the importance and challenges of multivariable association analysis in microbiome research, and propose a new method to handle such complex data.

PLOS COMPUTATIONAL BIOLOGY (2021)

Article Microbiology

Characterization of the Eukaryotic Virome of Mice from Different Sources

Chunye Zhang et al.

Summary: Accumulated studies have shown that the host microbiome has an influence on the development and progression of many diseases, including the important role of the viral component in host health and disease. This research demonstrated that mice from pet store sources had a more diverse eukaryotic virome compared to lab mice, with a novel norovirus strain identified in one source.

MICROORGANISMS (2021)

Review Cell Biology

Fusobacterium nucleatum Acts as a Pro-carcinogenic Bacterium in Colorectal Cancer: From Association to Causality

Shuang Wang et al.

Summary: This review summarizes the biological characteristics of Fusobacterium nucleatum (F. nucleatum) and its epidemiological associations with colorectal cancer (CRC), highlighting the mechanisms by which F. nucleatum participates in CRC progression, metastasis, and chemoresistance. The research gap in this field is discussed, and the authors provide their perspective for future studies. These findings suggest potential strategies for manipulating gut F. nucleatum to address CRC in the future.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)

Article Biotechnology & Applied Microbiology

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks

Ho Bin Jang et al.

NATURE BIOTECHNOLOGY (2019)

Article Biotechnology & Applied Microbiology

Improved metagenomic analysis with Kraken 2

Derrick E. Wood et al.

GENOME BIOLOGY (2019)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Article Gastroenterology & Hepatology

Alterations in Enteric Virome Are Associated With Colorectal Cancer and Survival Outcomes

Geicho Nakatsu et al.

GASTROENTEROLOGY (2018)

Review Gastroenterology & Hepatology

Colorectal Cancer in Inflammatory Bowel Disease

Ryan W. Stidham et al.

CLINICS IN COLON AND RECTAL SURGERY (2018)

Article Gastroenterology & Hepatology

Tumour-associated and non-tumour-associated microbiota in colorectal cancer

Burkhardt Flemer et al.

Review Infectious Diseases

Gut microbiota and colorectal cancer

R. Gao et al.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2017)

Article Multidisciplinary Sciences

Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

Guoyan Zhao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Virology

Origins and challenges of viral dark matter

Siddharth R. Krishnamurthy et al.

VIRUS RESEARCH (2017)

Article Gastroenterology & Hepatology

Gut microbiota imbalance and colorectal cancer

Johan Gagniere et al.

WORLD JOURNAL OF GASTROENTEROLOGY (2016)

Article Biochemistry & Molecular Biology

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

Jason M. Norman et al.

Article Gastroenterology & Hepatology

A Model to Determine Colorectal Cancer Risk Using Common Genetic Susceptibility Loci

Li Hsu et al.

GASTROENTEROLOGY (2015)

Article Immunology

Epithelial NAIPs protect against colonic tumorigenesis

Ramanjaneyulu Allam et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2015)

Article Biochemistry & Molecular Biology

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

Aleksandar D. Kostic et al.

GENOME RESEARCH (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Mathematical & Computational Biology

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

Li C. Xia et al.

BMC SYSTEMS BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Metagenomic biomarker discovery and explanation

Nicola Segata et al.

GENOME BIOLOGY (2011)

Article Biochemical Research Methods

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)