Related references
Note: Only part of the references are listed.ESBL-producing Klebsiella pneumoniae in a University hospital: Molecular features, diffusion of epidemic clones and evaluation of cross-transmission
Pierre Edwige L. Fils et al.
PLOS ONE (2021)
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Francesco Beghini et al.
ELIFE (2021)
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex
Margaret M. C. Lam et al.
NATURE COMMUNICATIONS (2021)
A Sequence Type 23 Hypervirulent Klebsiella pneumoniae Strain Presenting Carbapenem Resistance by Acquiring an IncP1 bla (KPC-2) Plasmid
Rushuang Yan et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2021)
Population genomics of Klebsiella pneumoniae
Kelly L. Wyres et al.
NATURE REVIEWS MICROBIOLOGY (2020)
Molecular Characteristics of Klebsiella pneumoniae Isolates From Outpatients in Sentinel Hospitals, Beijing, China, 2010-2019
Bing Lu et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2020)
Genomic characteristics of clinically important ST11 Klebsiella pneumoniae strains worldwide
Jiankang Zhao et al.
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2020)
Epidemiology of multidrug-resistant Enterobacteriaceae in Sri Lanka: First evidence of blaKPC harboring Klebsiella pneumoniae
Wirittamulla Gamage Maheshika Kumudunie et al.
JOURNAL OF INFECTION AND PUBLIC HEALTH (2020)
Diversity within species: interpreting strains in microbiomes
Thea Van Rossum et al.
NATURE REVIEWS MICROBIOLOGY (2020)
Emergence of Multidrug Resistant Hypervirulent ST23 Klebsiella pneumoniae: Multidrug Resistant Plasmid Acquisition Drives Evolution
Chaitra Shankar et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2020)
Virulence evolution, molecular mechanisms of resistance and prevalence of ST11 carbapenem-resistant Klebsiella pneumoniae in China: A review over the last 10 years
Wenjian Liao et al.
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2020)
Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China
Kai Zhou et al.
EMERGING INFECTIOUS DISEASES (2020)
Resistance mechanisms and population structure of highly drug resistant Klebsiella in Pakistan during the introduction of the carbapenemase NDM-1
Eva Heinz et al.
SCIENTIFIC REPORTS (2019)
Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis
M. R. Wilson et al.
NEW ENGLAND JOURNAL OF MEDICINE (2019)
Emergence of a Multidrug-Resistant Hypervirulent Klebsiella pneumoniae Sequence Type 23 Strain with a Rare blaCTX-M-24-Harboring Virulence Plasmid
Dingxia Shen et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2019)
VFDB 2019: a comparative pathogenomic platform with an interactive web interface
Bo Liu et al.
NUCLEIC ACIDS RESEARCH (2019)
High Prevalence of Multidrug-Resistant Klebsiella pneumoniae Harboring Several Virulence and β-Lactamase Encoding Genes in a Brazilian Intensive Care Unit
Roumayne L. Ferreira et al.
FRONTIERS IN MICROBIOLOGY (2019)
Metagenomic next-generation sequencing for mixed pulmonary infection diagnosis
Jiahui Wang et al.
BMC PULMONARY MEDICINE (2019)
Epidemiology of Carbapenemase-Producing Klebsiella pneumoniae in a Hospital, Portugal
Marta Aires-de-Sousa et al.
EMERGING INFECTIOUS DISEASES (2019)
Profiling microbial strains in urban environments using metagenomic sequencing data
Moreno Zolfo et al.
BIOLOGY DIRECT (2018)
A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study
Danxia Gu et al.
LANCET INFECTIOUS DISEASES (2018)
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
Margaret M. C. Lam et al.
NATURE COMMUNICATIONS (2018)
Colonization, Infection, and the Accessory Genome of Klebsiella pneumoniae
Rebekah M. Martin et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2018)
Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree
Guangchuang Yu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Margaret M. C. Lam et al.
MICROBIAL GENOMICS (2018)
MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
Moreno Zolfo et al.
NUCLEIC ACIDS RESEARCH (2017)
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
Baofeng Jia et al.
NUCLEIC ACIDS RESEARCH (2017)
Microbial strain-level population structure and genetic diversity from metagenomes
Duy Tin Truong et al.
GENOME RESEARCH (2017)
Application of next generation sequencing in clinical microbiology and infection prevention
Ruud H. Deurenberg et al.
JOURNAL OF BIOTECHNOLOGY (2017)
The Resistance Phenotype and Molecular Epidemiology of Klebsiella pneumoniae in Bloodstream Infections in Shanghai, China, 2012-2015
Shu-zhen Xiao et al.
FRONTIERS IN MICROBIOLOGY (2017)
Bracken: estimating species abundance in metagenomics data
Jennifer Lu et al.
PEERJ COMPUTER SCIENCE (2017)
Comparative analyses of phenotypic methods and 16S rRNA, khe, rpoB genes sequencing for identification of clinical isolates of Klebsiella pneumoniae
Yanxia He et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2016)
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
Zuguang Gu et al.
BIOINFORMATICS (2016)
Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.
Mobolaji Adeolu et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
Klebsiella pneumoniae: Going on the Offense with a Strong Defense
Michelle K. Paczosa et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2016)
Strain-level microbial epidemiology and population genomics from shotgun metagenomics
Matthias Scholz et al.
NATURE METHODS (2016)
Identification of Klebsiella capsule synthesis loci from whole genome data
Kelly L. Wyres et al.
MICROBIAL GENOMICS (2016)
The diversity of Klebsiella pneumoniae surface polysaccharides
Rainer Follador et al.
MICROBIAL GENOMICS (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health
Kathryn E. Holt et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Clinical relevance of the ESKAPE pathogens
Jack N. Pendleton et al.
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY (2013)
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
Nicola Segata et al.
NATURE COMMUNICATIONS (2013)
Hypervirulent (hypermucoviscous) Klebsiella pneumoniae A new and dangerous breed
Alyssa S. Shon et al.
VIRULENCE (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Prevalence of transferable blaCTX-M-15 from hospital- and community-acquired Klebsiella pneumoniae isolates in Scotland
A. Younes et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2011)
ST11, the dominant clone of KPC-producing Klebsiella pneumoniae in China
Yan Qi et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2011)
Outbreak of Klebsiella pneumoniae carbapenemase 2-producing K. pneumoniae with high qnr prevalence in a Chinese hospital
Rang Zhang et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2011)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Characterization of integrative and conjugative element ICEKp1-associated genomic heterogeneity in a Klebsiella pneumoniae strain isolated from a primary liver abscess
Tzu-Lung Lin et al.
JOURNAL OF BACTERIOLOGY (2008)
Capsular serotype K1 or K2, rather than magA and rmpA, is a major virulence determinant for Klebsiella pneumoniae liver abscess in Singapore and Taiwan
Kuo-Ming Yeh et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2007)
Escherichia coli induces DNA double-strand breaks in eukaryotic cells
Jean-Philippe Nougayrede et al.
SCIENCE (2006)
The COG database: an updated version includes eukaryotes
RL Tatusov et al.
BMC BIOINFORMATICS (2003)
Share Paper
