Related references
Note: Only part of the references are listed.Human alveolar type 2 epithelium transdifferentiates into metaplastic KRT5+ basal cells
Jaymin J. Kathiriya et al.
NATURE CELL BIOLOGY (2022)
Basal-Like Cell-Conditioned Medium Exerts Anti-Fibrotic Effects In Vitro and In Vivo
Petra Khan et al.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2022)
Orchestrating single-cell analysis with Bioconductor
Robert A. Amezquita et al.
NATURE METHODS (2020)
Single-cell transcriptional diversity is a hallmark of developmental potential
Gunsagar S. Gulati et al.
SCIENCE (2020)
Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
Taylor S. Adams et al.
SCIENCE ADVANCES (2020)
Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
Arun C. Habermann et al.
SCIENCE ADVANCES (2020)
Generalizing RNA velocity to transient cell states through dynamical modeling
Volker Bergen et al.
NATURE BIOTECHNOLOGY (2020)
Alveolar regeneration through a Krt8+transitional stem cell state that persists in human lung fibrosis
Maximilian Strunz et al.
NATURE COMMUNICATIONS (2020)
Basal-like Progenitor Cells: A Review of Dysplastic Alveolar Regeneration and Remodeling in Lung Repair
Maria Fernanda de Mello Costa et al.
STEM CELL REPORTS (2020)
A molecular cell atlas of the human lung from single-cell RNA sequencing
Kyle J. Travaglini et al.
NATURE (2020)
BAL Cell Gene Expression Is Indicative of Outcome and Airway Basal Cell Involvement in Idiopathic Pulmonary Fibrosis
Antje Prasse et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2019)
Surfactant dysfunction and alveolar collapse are linked with fibrotic septal wall remodeling in the TGF-β1-induced mouse model of pulmonary fibrosis
Lukas Beike et al.
LABORATORY INVESTIGATION (2019)
The barcode, UMI, set format and BUStools
Pall Melsted et al.
BIOINFORMATICS (2019)
FGF10-FGFR2B Signaling Generates Basal Cells and Drives Alveolar Epithelial Regeneration by Bronchial Epithelial Stem Cells after Lung Injury
Tingting Yuan et al.
STEM CELL REPORTS (2019)
Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis
Paul A. Reyfman et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2019)
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
Dvir Aran et al.
NATURE IMMUNOLOGY (2019)
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
Aaron T. L. Lun et al.
GENOME BIOLOGY (2019)
Spatial-Temporal Lineage Restrictions of Embryonic p63+ Progenitors Establish Distinct Stem Cell Pools in Adult Airways
Ying Yang et al.
DEVELOPMENTAL CELL (2018)
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
Laleh Haghverdi et al.
NATURE BIOTECHNOLOGY (2018)
Detection and removal of barcode swapping in single-cell RNA-seq data
Jonathan A. Griffiths et al.
NATURE COMMUNICATIONS (2018)
Diagnosis of Idiopathic Pulmonary Fibrosis An Official ATS/ERS/JRS/ALAT Clinical Practice Guideline
Ganesh Raghu et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2018)
RNA velocity of single cells
Gioele La Manno et al.
NATURE (2018)
Expansion of Airway Basal Cells and Generation of Polarized Epithelium
Hannah Levardon et al.
BIO-PROTOCOL (2018)
Normalizing single-cell RNA sequencing data: challenges and opportunities
Catalina A. Vallejos et al.
NATURE METHODS (2017)
Multipotent mesenchymal stem cells in lung fibrosis
Katrin E. Hostettler et al.
PLOS ONE (2017)
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
Davis J. McCarthy et al.
BIOINFORMATICS (2017)
Ensembl comparative genomics resources
Javier Herrero et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
Aaron T. L. Lun et al.
GENOME BIOLOGY (2016)
Classification of low quality cells from single-cell RNA-seq data
Tomislav Ilicic et al.
GENOME BIOLOGY (2016)
Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis
Yan Xu et al.
JCI INSIGHT (2016)
Detection and quantification of epithelial progenitor cell populations in human healthy and IPF lungs
N. F. Smirnova et al.
RESPIRATORY RESEARCH (2016)
p63+Krt5+ distal airway stem cells are essential for lung regeneration
Wei Zuo et al.
NATURE (2015)
Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury
Andrew E. Vaughan et al.
NATURE (2015)
Type 2 alveolar cells are stem cells in adult lung
Christina E. Barkauskas et al.
JOURNAL OF CLINICAL INVESTIGATION (2013)
The Idiopathic Pulmonary Fibrosis Honeycomb Cyst Contains A Mucocilary Pseudostratified Epithelium
Max A. Seibold et al.
PLOS ONE (2013)
An Official ATS/ERSARS/ALAT Statement: Idiopathic Pulmonary Fibrosis: Evidence-based Guidelines for Diagnosis and Management
Ganesh Raghu et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2011)
Distal Airway Stem Cells Yield Alveoli In Vitro and during Lung Regeneration following H1N1 Influenza Infection
Pooja A. Kumar et al.
CELL (2011)
Ectopic respiratory epithelial cell differentiation in bronchiolised distal airspaces in idiopathic pulmonary fibrosis
Laurent Plantier et al.
THORAX (2011)
Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling
Jason R. Rock et al.
DISEASE MODELS & MECHANISMS (2010)
Dimethylfumarate inhibits NF-κB function at multiple levels to limit airway smooth muscle cell cytokine secretion
P. Seidel et al.
AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY (2009)
Basal cells as stem cells of the mouse trachea and human airway epithelium
Jason R. Rock et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Abnormal re-epithelialization and lung remodeling in idiopathic pulmonary fibrosis:: The role of ΔN-p63
M Chilosi et al.
LABORATORY INVESTIGATION (2002)
Idiopathic pulmonary fibrosis: Prevailing and evolving hypotheses about its pathogenesis and implications for therapy
M Selman et al.
ANNALS OF INTERNAL MEDICINE (2001)