4.7 Article

In Silico prediction of the molecular basis of ClTx and AaCTx interaction with matrix metalloproteinase-2 (MMP-2) to inhibit glioma cell invasion

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Mapping intermolecular interactions and active site conformations: from human MMP-1 crystal structure to molecular dynamics free energy calculations

Anthony Nash et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2017)

Article Biochemistry & Molecular Biology

New strategies for targeting matrix metalloproteinases

Gregg B. Fields

MATRIX BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Identification of potent inhibitors against snake venom metalloproteinase (SVMP) using molecular docking and molecular dynamics studies

Sathishkumar Chinnasamy et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2015)

Review Neurosciences

A neurocentric perspective on glioma invasion

Vishnu Anand Cuddapah et al.

NATURE REVIEWS NEUROSCIENCE (2014)

Article Biochemistry & Molecular Biology

Binding interface prediction by combining protein-protein docking results

Howook Hwang et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2014)

Article Chemistry, Physical

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald

Romelia Salomon-Ferrer et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)

Article Chemistry, Physical

MMPBSA.py: An Efficient Program for End-State Free Energy Calculations

Bill R. Miller et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)

Article Chemistry, Physical

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born

Andreas W. Goetz et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)

Article Pharmacology & Pharmacy

Chlorotoxin Fused to IgG-Fc Inhibits Glioblastoma Cell Motility via Receptor-Mediated Endocytosis

Tomonari Kasai et al.

JOURNAL OF DRUG DELIVERY (2012)

Article Biochemistry & Molecular Biology

Advances in all atom sampling methods for modeling protein-ligand binding affinities

Emilio Gallicchio et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)

Article Chemistry, Medicinal

Chemical Re-engineering of Chlorotoxin Improves Bioconjugation Properties for Tumor Imaging and Targeted Therapy

Muharrem Akcan et al.

JOURNAL OF MEDICINAL CHEMISTRY (2011)

Article Multidisciplinary Sciences

Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library

Brian G. Pierce et al.

PLOS ONE (2011)

Article Chemistry, Physical

Structural Survey of Zinc-Containing Proteins and Development of the Zinc AMBER Force Field (ZAFF)

Martin B. Peters et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)

Article Biochemical Research Methods

Are Scoring Functions in Protein-Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark

Panagiotis L. Kastritis et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Regulatory Mechanism of Matrix Metalloprotease-2 Enzymatic Activity by Factor Xa and Thrombin

Bon-Hun Koo et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Review Biochemistry & Molecular Biology

Progress in the development of matrix metalloproteinase inhibitors

GuoGang Tu et al.

CURRENT MEDICINAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

How well can the accuracy of comparative protein structure models be predicted?

David Eramian et al.

PROTEIN SCIENCE (2008)

Review Biochemistry & Molecular Biology

Control of matrix metalloproteinase catalytic activity

Hyun-Jeong Ra et al.

MATRIX BIOLOGY (2007)

Article Biochemistry & Molecular Biology

ZRANK: Reranking protein docking predictions with an optimized energy function

Brian Pierce et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Review Biochemistry & Molecular Biology

Statistical potential for assessment and prediction of protein structures

Min-Yi Shen et al.

PROTEIN SCIENCE (2006)

Article Multidisciplinary Sciences

Toward high-resolution de novo structure prediction for small proteins

P Bradley et al.

SCIENCE (2005)

Article Biochemistry & Molecular Biology

All are not equal: A benchmark of different homology modeling programs

B Wallner et al.

PROTEIN SCIENCE (2005)

Article Biochemistry & Molecular Biology

Structural basis for the highly selective inhibition of MMP-13

CK Engel et al.

CHEMISTRY & BIOLOGY (2005)

Article Chemistry, Multidisciplinary

UCSF chimera - A visualization system for exploratory research and analysis

EF Pettersen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

Structure validation by Cα geometry:: φ,ψ and Cβ deviation

SC Lovell et al.

PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)

Article Biochemistry & Molecular Biology

Chlorotoxin inhibits glioma cell invasion via matrix metalloproteinase-2

J Deshane et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Review Oncology

New functions for the matrix metalloproteinases in cancer progression

M Egeblad et al.

NATURE REVIEWS CANCER (2002)

Review Hematology

Role of the matrix metalloproteinase and plasminogen activator-plasmin systems in angiogenesis

MS Pepper

ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY (2001)

Article Biophysics

Anisotropy of fluctuation dynamics of proteins with an elastic network model

AR Atilgan et al.

BIOPHYSICAL JOURNAL (2001)