4.7 Article

Genomic dissection of the microevolution of Australian epidemic Bordetella pertussis

Related references

Note: Only part of the references are listed.
Article Microbiology

Molecular epidemiology of Bordetella pertussis and analysis of vaccine antigen genes from clinical isolates from Shenzhen, China

Shuang Wu et al.

Summary: Although pertussis cases have been controlled globally through the Expanded Programme on Immunization, the incidence of pertussis has significantly increased in recent years, especially in developed countries. In Shenzhen, 50 strains of Bordetella pertussis were collected for genotypic and molecular epidemiological analysis, with some strains showing variation possibly associated with the increased incidence. The positive rate of cases under one-year-old was significantly higher, indicating the need for specific monitoring and control measures.

ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS (2021)

Article Biochemistry & Molecular Biology

Living Trees: High-Quality Reproducible and Reusable Construction of Bacterial Phylogenetic Trees

Dalong Hu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Multidisciplinary Sciences

Impact of international travel and border control measures on the global spread of the novel 2019 coronavirus outbreak

Chad R. Wells et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Immunology

Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China

Zheng Xu et al.

EMERGING MICROBES & INFECTIONS (2019)

Article Public, Environmental & Occupational Health

Estimating seasonal variation in Australian pertussis notifications from 1991 to 2016: evidence of spring to summer peaks

R. N. F. Leong et al.

EPIDEMIOLOGY AND INFECTION (2019)

Article Immunology

Genomic Survey of Bordetella pertussis Diversity, United States, 2000-2013

Michael R. Weigand et al.

EMERGING INFECTIOUS DISEASES (2019)

Article Biochemical Research Methods

Proteomic Adaptation of Australian Epidemic Bordetella pertussis

Laurence Don Wai Luu et al.

PROTEOMICS (2018)

Article Immunology

Bordetella pertussis pertactin knock-out strains reveal immunomodulatory properties of this virulence factor

Elise Sofie Hovingh et al.

EMERGING MICROBES & INFECTIONS (2018)

Article Microbiology

The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement

Michael R. Weigand et al.

JOURNAL OF BACTERIOLOGY (2017)

Article Infectious Diseases

An update of the global burden of pertussis in children younger than 5 years: a modelling study

Karene Hoi Ting Yeung et al.

LANCET INFECTIOUS DISEASES (2017)

Article Infectious Diseases

Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic

Azadeh Safarchi et al.

JOURNAL OF INFECTION (2016)

Article Biochemical Research Methods

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

Yongwook Choi et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Review Immunology

Bordetella pertussis fimbriae (Fim): relevance for vaccines

Andrew R. Gorringe et al.

EXPERT REVIEW OF VACCINES (2014)

Editorial Material Immunology

Changing Pertussis Epidemiology: Everything Old is New Again

Thomas A. Clark

JOURNAL OF INFECTIOUS DISEASES (2014)

Article Genetics & Heredity

Loss and Recovery of Genetic Diversity in Adapting Populations of HIV

Pleuni S. Pennings et al.

PLOS GENETICS (2014)

Article Immunology

Rapid Increase in Pertactin-deficient Bordetella pertussis Isolates, Australia

Connie Lam et al.

EMERGING INFECTIOUS DISEASES (2014)

Review Ecology

Population genomics of rapid adaptation by soft selective sweeps

Philipp W. Messer et al.

TRENDS IN ECOLOGY & EVOLUTION (2013)

Article Infectious Diseases

Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis

Connie Lam et al.

INFECTION GENETICS AND EVOLUTION (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Ecology

phytools: an R package for phylogenetic comparative biology (and other things)

Liam J. Revell

METHODS IN ECOLOGY AND EVOLUTION (2012)

Article Immunology

Population Diversity among Bordetella pertussis Isolates, United States, 1935-2009

Amber J. Schmidtke et al.

EMERGING INFECTIOUS DISEASES (2012)

Article Biochemistry & Molecular Biology

Insight into Evolution of Bordetella pertussis from Comparative Genomic Analysis: Evidence of Vaccine-Driven Selection

Sophie Octavia et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Multidisciplinary Sciences

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling et al.

PLOS ONE (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Review Multidisciplinary Sciences

Darwin's bridge between microevolution and macroevolution

David N. Reznick et al.

NATURE (2009)

Article Biology

Density-dependent diversification in North American wood warblers

Daniel L. Rabosky et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2008)