Related references
Note: Only part of the references are listed.Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis
Christopher J. L. Murray et al.
LANCET (2022)
Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR)
Monica Abrudan et al.
CLINICAL INFECTIOUS DISEASES (2021)
rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data
Ivan Sserwadda et al.
Microbial Genomics (2021)
Revisiting Species Identification within the Enterobacter cloacae Complex by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Alexandre Godmer et al.
MICROBIOLOGY SPECTRUM (2021)
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis
David Vallenet et al.
NUCLEIC ACIDS RESEARCH (2020)
Population genomics of Klebsiella pneumoniae
Kelly L. Wyres et al.
NATURE REVIEWS MICROBIOLOGY (2020)
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes
Robert A. Petit et al.
MSYSTEMS (2020)
Whole-genome sequencing as part of national and international surveillance programmes for antimicrobial resistance: a roadmap
Carotin Vegyari et al.
BMJ GLOBAL HEALTH (2020)
BacPipe: A Rapid, User-Friendly Whole-Genome Sequencing Pipeline for Clinical Diagnostic Bacteriology
Basil B. Xavier et al.
ISCIENCE (2020)
Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania
Happiness H. Kumburu et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2019)
Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov
Carla Rodrigues et al.
RESEARCH IN MICROBIOLOGY (2019)
TORMES: an automated pipeline for whole bacterial genome analysis
Narciso M. Quijada et al.
BIOINFORMATICS (2019)
AJAX Technology for Internet of Things
Traian Turc
12TH INTERNATIONAL CONFERENCE INTERDISCIPLINARITY IN ENGINEERING (INTER-ENG 2018) (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
Global analysis of strategies to tackle antimicrobial resistance
Funke Adeniji
INTERNATIONAL JOURNAL OF PHARMACY PRACTICE (2018)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Polymyxins: Antibacterial Activity, Susceptibility Testing, and Resistance Mechanisms Encoded by Plasmids or Chromosomes
Laurent Poirel et al.
CLINICAL MICROBIOLOGY REVIEWS (2017)
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
Silvia Argimon et al.
MICROBIAL GENOMICS (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Alessandra Carattoli et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
PATRIC, the bacterial bioinformatics database and analysis resource
Alice R. Wattam et al.
NUCLEIC ACIDS RESEARCH (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Identification of acquired antimicrobial resistance genes
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Transcriptional regulation of the mexEF-oprN multidrug efflux pump operon by MexT and an unidentified repressor in nfxC-type mutant of Pseudomonas aeruginosa
Hideaki Maseda et al.
FEMS MICROBIOLOGY LETTERS (2010)