4.6 Article

Comparative Genomic Analysis Revealed Distinct Molecular Components and Organization of CO2-Concentrating Mechanism in Thermophilic Cyanobacteria

Related references

Note: Only part of the references are listed.
Article Microbiology

Characterization of a Novel Hot-Spring Cyanobacterium Leptodesmis sichuanensis sp. Nov. and Genomic Insights of Molecular Adaptations Into Its Habitat

Jie Tang et al.

Summary: The study describes several strains of filamentous cyanobacteria from different, primarily cold environments, belonging to the genus Leptodesmis. The complete genome of a novel hot-spring strain, Leptodesmis sp. PKUAC-SCTA121 (A121), isolated from Erdaoqiao hot springs in China, was sequenced. The results confirm the establishment of a new species within Leptodesmis, named Leptodesmis sichuanensis sp. nov. The study also provides the first insight into the genomic features of the genus Leptodesmis and lays the foundation for future global ecogenomic and geogenomic studies.

FRONTIERS IN MICROBIOLOGY (2022)

Article Chemistry, Physical

Catalytic activity of plasma-deposited Co3O4-based thin films for CO2 hydration-A new approach to carbon capture applications

Hanna Kierzkowska-Pawlak et al.

Summary: This study proposes the use of a new class of inorganic catalysts to accelerate the hydration process and increase the rate of CO2 capture. The results show that the catalyst reacts with CO2 at the interface, leading to improved absorption of CO2.

APPLIED CATALYSIS B-ENVIRONMENTAL (2022)

Article Microbiology

Polyphasic Identification and Genomic Insights of Leptothermofonsia sichuanensis gen. sp. nov., a Novel Thermophilic Cyanobacteria Within Leptolyngbyaceae

Jie Tang et al.

Summary: In this study, a thermophilic strain, PKUAC-SCTAE412, recovered from Lotus Lake hot spring in China, was characterized using polyphasic approaches. The results supported the existence of a novel genus within Leptolyngbyaceae, which was further confirmed by genomic analyses. The complete genome of this strain provided insights into its adaptation to the hot spring environment and revealed a large number of genes possibly acquired through horizontal gene transfer. The study lays the foundation for future global ecogenomic and geogenomic studies.

FRONTIERS IN MICROBIOLOGY (2022)

Article Ecology

Comparative genomics reveals insights into cyanobacterial evolution and habitat adaptation

Meng-Yun Chen et al.

Summary: Based on phylogenetic and comparative genomic analyses of 650 cyanobacterial genomes, this study revealed that terrestrial cyanobacteria expand gene families to cope with fluctuating environments, while many marine strains undergo gene contraction to adapt to nutrient-poor conditions. Genes strongly associated with specific habitats, such as those involved in light sensing, chemotaxis, and nutrient transporters, are crucial for the survival and adaptation of cyanobacteria. Furthermore, a significant proportion of genes facilitating habitat adaptation are acquired through horizontal gene transfer, with terrestrial cyanobacteria showing higher rates of genetic exchanges.

ISME JOURNAL (2021)

Review Microbiology

Evolutionary relationships among shell proteins of carboxysomes and metabolosomes

Matthew R. Melnicki et al.

Summary: Bacterial microcompartments (BMCs) are self-assembling prokaryotic organelles that encapsulate enzymes within a polyhedral protein shell. The shells are composed of distinct domains forming pentagonal and hexagonal building blocks. Recent phylogenomic surveys have revealed specific structural features of BMCs' building blocks, suggesting distinct functional roles across diverse BMC families.

CURRENT OPINION IN MICROBIOLOGY (2021)

Article Chemistry, Multidisciplinary

Evaluation of the temperature dependence of dissociation constants for the marine carbon system using pH and certified reference materials

Ryan J. Woosley

Summary: The study evaluates the marine carbon cycle using internal consistency calculations and spectrophotometric pH measurements, revealing that the choice of formulation for certain dissociation constants may add uncertainties. The total boron concentration significantly impacts the calculated pH, with the recommendation to use the values of Lee et al. (2010) for better internal consistency.

MARINE CHEMISTRY (2021)

Article Microbiology

Description, Taxonomy, and Comparative Genomics of a Novel species, Thermoleptolyngbya sichuanensis sp. nov., Isolated From Hot Springs of Ganzi, Sichuan, China

Jie Tang et al.

Summary: The study identified a thermophilic strain and proposed a new taxon Thermoleptolyngbya sichuanensis sp. nov. based on polyphasic approaches. The strain showed genetic adaptations to hot spring environments and displayed genetic divergence from other strains at the genome scale.

FRONTIERS IN MICROBIOLOGY (2021)

Article Biochemistry & Molecular Biology

Origin and Evolution of Carboxysome Positioning Systems in Cyanobacteria

Joshua S. MacCready et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Review Plant Sciences

Prospects for Engineering Biophysical CO2 Concentrating Mechanisms into Land Plants to Enhance Yields

Jessica H. Hennacy et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 71, 2020 (2020)

Review Biotechnology & Applied Microbiology

Microalgae-based nitrogen bioremediation

Hui Chen et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2020)

Article Multidisciplinary Sciences

Life cycle of a cyanobacterial carboxysome

Nicholas C. Hill et al.

SCIENCE ADVANCES (2020)

Article Plant Sciences

Phylogeny and taxonomy of Synechococcus-like cyanobacteria

Jiri Komarek et al.

FOTTEA (2020)

Article Genetics & Heredity

Taxonomic Novelty and Distinctive Genomic Features of Hot Spring Cyanobacteria

Jaime Alcorta et al.

FRONTIERS IN GENETICS (2020)

Article Agricultural Engineering

Thermosynechococcus as a thermophilic photosynthetic microbial cell factory for CO2 utilisation

Yuanmei Liang et al.

BIORESOURCE TECHNOLOGY (2019)

Review Agricultural Engineering

A perspective on biotechnological applications of thermophilic microalgae and cyanobacteria

Alok Patel et al.

BIORESOURCE TECHNOLOGY (2019)

Article Biotechnology & Applied Microbiology

Potential new genera of cyanobacterial strains isolated from thermal springs of western Sichuan, China

Jie Tang et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2018)

Article Biotechnology & Applied Microbiology

Thermosynechococcaceae as a source of thermostable C-phycocyanins: properties and molecular insights

Yuanmei Liang et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2018)

Review Chemistry, Multidisciplinary

Cyanobacteria as photoautotrophic biofactories of high-value chemicals

Daniel Norena-Caro et al.

JOURNAL OF CO2 UTILIZATION (2018)

Review Plant Sciences

On the cradle of CCM research: discovery, development, and challenges ahead

Aaron Kaplan

JOURNAL OF EXPERIMENTAL BOTANY (2017)

Review Plant Sciences

The possible evolution and future of CO2-concentrating mechanisms

John A. Raven et al.

JOURNAL OF EXPERIMENTAL BOTANY (2017)

Article Plant Sciences

Co-ordination of NDH and Cup proteins in CO2 uptake in cyanobacterium Synechocystis sp PCC 6803

Xunling Han et al.

JOURNAL OF EXPERIMENTAL BOTANY (2017)

Article Biotechnology & Applied Microbiology

Nitrogen Fixation Genes and Nitrogenase Activity of the Non-Heterocystous Cyanobacterium Thermoleptolyngbya sp O-77

Ki-Seok Yoon et al.

MICROBES AND ENVIRONMENTS (2017)

Article Microbiology

Ecogenomics and Taxonomy of Cyanobacteria Phylum

Juline M. Walter et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Exploring Components of the CO2-Concentrating Mechanism in Alkaliphilic Cyanobacteria Through Genome-Based Analysis

Amornpan Klanchui et al.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2017)

Review Plant Sciences

Assembly, function and evolution of cyanobacterial carboxysomes

Cheryl A. Kerfeld et al.

CURRENT OPINION IN PLANT BIOLOGY (2016)

Article Plant Sciences

A polyphasic approach for the taxonomy of cyanobacteria: principles and applications

Jiri Komarek

EUROPEAN JOURNAL OF PHYCOLOGY (2016)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Multidisciplinary Sciences

pH determines the energetic efficiency of the cyanobacterial CO2 concentrating mechanism

Niall M. Mangan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemistry & Molecular Biology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks et al.

GENOME RESEARCH (2015)

Review Biotechnology & Applied Microbiology

Mechanisms of carbon fixation and engineering for increased carbon fixation in cyanobacteria

Claudia Durall et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2015)

Review Microbiology

CO2-concentrating mechanism and its traits in haloalkaliphilic cyanobacteria

E. V. Kupriyanova et al.

MICROBIOLOGY (2015)

Article Biochemical Research Methods

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Chen-Shan Chin et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

Patrick M. Shih et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Geochemistry & Geophysics

Cyanobacteria as Biocatalysts for Carbonate Mineralization

Nina A. Kamennaya et al.

MINERALS (2012)

Review Plant Sciences

Inorganic carbon transporters of the cyanobacterial CO2 concentrating mechanism

G. Dean Price

PHOTOSYNTHESIS RESEARCH (2011)

Article Mathematical & Computational Biology

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

Matteo Brilli et al.

BMC SYSTEMS BIOLOGY (2010)

Article Multidisciplinary Sciences

Structural basis of the oxidative activation of the carboxysomal γ-carbonic anhydrase, CcmM

Kerry L. Pena et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Identification and Structural Analysis of a Novel Carboxysome Shell Protein with Implications for Metabolite Transport

Michael G. Klein et al.

JOURNAL OF MOLECULAR BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Article Plant Sciences

RbcX can function as a Rubisco chaperonin, but is non-essential in Synechococcus PCC7942

Daniel Emlyn-Jones et al.

PLANT AND CELL PHYSIOLOGY (2006)

Article Multidisciplinary Sciences

Protein structures forming the shell of primitive bacterial organelles

CA Kerfeld et al.

SCIENCE (2005)

Article Plant Sciences

Cyanobacterial carbonic anhydrases

AKC So et al.

CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE (2005)

Article Multidisciplinary Sciences

Identification of a SulP-type bicarbonate transporter in marine cyanobacteria

GD Price et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Plant Sciences

Evolution and diversity of CO2 concentrating mechanisms in cyanobacteria

MR Badger et al.

FUNCTIONAL PLANT BIOLOGY (2002)

Article Chemistry, Multidisciplinary

The definition and unit of ionic strength

T Solomon

JOURNAL OF CHEMICAL EDUCATION (2001)