Related references
Note: Only part of the references are listed.Nanopore Technology and Its Applications in Gene Sequencing
Bo Lin et al.
BIOSENSORS-BASEL (2021)
Benchmarking of next and third generation sequencing technologies and their associated algorithms for de novo genome assembly
Marios Gavrielatos et al.
MOLECULAR MEDICINE REPORTS (2021)
Morphological and Taxonomic Properties of the Newly Isolated Cotonvirus japonicus, a New Lineage of the Subfamily Megavirinae
Haruna Takahashi et al.
JOURNAL OF VIROLOGY (2021)
Isolation of Yasminevirus, the First Member of Klosneuvirinae Isolated in Coculture with Vermamoeba vermiformis, Demonstrates an Extended Arsenal of Translational Apparatus Components
Leena Hussein Bajrai et al.
JOURNAL OF VIROLOGY (2020)
Adeno-Associated Virus Serotype-Specific Inverted Terminal Repeat Sequence Role in Vector Transgene Expression
Lauriel F. Earley et al.
HUMAN GENE THERAPY (2020)
Medusavirus, a Novel Large DNA Virus Discovered from Hot Spring Water
Genki Yoshikawa et al.
JOURNAL OF VIROLOGY (2019)
Gram-Positive Bacteria-Like DNA Binding Machineries Involved in Replication Initiation and Termination Mechanisms of Mimivirus
Motohiro Akashi et al.
VIRUSES-BASEL (2019)
Pandoravirus Celtis Illustrates the Microevolution Processes at Work in the Giant Pandoraviridae Genomes
Matthieu Legendre et al.
FRONTIERS IN MICROBIOLOGY (2019)
Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees
Balakrishnan Subramanian et al.
NUCLEIC ACIDS RESEARCH (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Tailed giant Tupanvirus possesses the most complete translational apparatus of the known virosphere
Jonatas Abrahao et al.
NATURE COMMUNICATIONS (2018)
MUMmer4: A fast and versatile genome alignment system
Guillaume Marcais et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
The kinetoplastid-infecting Bodo saltans virus (BsV), a window into the most abundant giant viruses in the sea
Christoph M. Deeg et al.
ELIFE (2018)
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Characterization of a new chlorovirus type with permissive and non-permissive features on phylogenetically related algal strains
Cristian F. Quispe et al.
VIROLOGY (2017)
Genome Characterization of the First Mimiviruses of Lineage C Isolated in Brazil
Felipe L. Assis et al.
FRONTIERS IN MICROBIOLOGY (2017)
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
Konstantin Okonechnikov et al.
BIOINFORMATICS (2016)
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
Michael Richter et al.
BIOINFORMATICS (2016)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Morphological and Taxonomic Properties of Tokyovirus, the First Marseilleviridae Member Isolated from Japan
Masaharu Takemura
MICROBES AND ENVIRONMENTS (2016)
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
Todd M. Lowe et al.
NUCLEIC ACIDS RESEARCH (2016)
SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
Wei Shen et al.
PLOS ONE (2016)
GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments
Shunichi Kosugi et al.
BIOINFORMATICS (2015)
In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba
Matthieu Legendre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Genome Segregation and Packaging Machinery in Acanthamoeba polyphaga Mimivirus Is Reminiscent of Bacterial Apparatus
Venkata Chelikani et al.
JOURNAL OF VIROLOGY (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
The complete genome sequence of the Alphaentomopoxvirus Anomala cuprea entomopoxvirus, including its terminal hairpin loop sequences, suggests a potentially unique mode of apoptosis inhibition and mode of DNA replication
Wataru Mitsuhashi et al.
VIROLOGY (2014)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
pamlX: A Graphical User Interface for PAML
Bo Xu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments
Zhang Zhang et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2012)
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
Jian Ye et al.
BMC BIOINFORMATICS (2012)
Related Giant Viruses in Distant Locations and Different Habitats: Acanthamoeba polyphaga moumouvirus Represents a Third Lineage of the Mimiviridae That Is Close to the Megavirus Lineage
Niyaz Yoosuf et al.
GENOME BIOLOGY AND EVOLUTION (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
Defne Arslan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids
Takashi Yoshida et al.
VIROLOGY JOURNAL (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
DNAPlotter: circular and linear interactive genome visualization
Tim Carver et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution
Natalya Yutin et al.
VIROLOGY JOURNAL (2009)
Gene and genome duplication in Acanthamoeba polyphaga Mimivirus
K Suhre
JOURNAL OF VIROLOGY (2005)
Protein database searches using compositionally adjusted substitution matrices
SF Altschul et al.
FEBS JOURNAL (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
The 1.2-megabase genome sequence of mimivirus
D Raoult et al.
SCIENCE (2004)
Common origin of four diverse families of large eukaryotic DNA viruses
LM Iyer et al.
JOURNAL OF VIROLOGY (2001)
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
J Besemer et al.
NUCLEIC ACIDS RESEARCH (2001)
The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
