4.7 Article

Changes to the gut microbiota of a wild juvenile passerine in a multidimensional urban mosaic

Related references

Note: Only part of the references are listed.
Review Ecology

Phenotypic variation in urban environments: mechanisms and implications

M. J. Thompson et al.

Summary: Numerous studies in the past decade have explored how urbanisation affects mean phenotypes of populations, but little is known about its impact on phenotypic variation, which plays a key role in shaping eco-evolutionary processes. Our review suggests that urbanisation often increases intraspecific phenotypic variation through various processes, with significant implications for urban populations and communities.

TRENDS IN ECOLOGY & EVOLUTION (2022)

Review Physiology

Meta-Analysis and Systematic Review of the Thermal Stress Response: Gallus gallus domesticus Show Low Immune Responses During Heat Stress

Sharif Hasan Siddiqui et al.

Summary: This meta-analysis reveals that heat stress has a significant impact on the body mass gain and immunoglobulin levels of broilers, and it is also associated with higher mortality rates. However, there were no significant changes observed in the immune organs between the control and heat-stressed groups.

FRONTIERS IN PHYSIOLOGY (2022)

Article Evolutionary Biology

Growing in the city: Urban evolutionary ecology of avian growth rates

Michela Corsini et al.

Summary: Rapid urbanization has a significant impact on offspring development, body mass, and survival, with high impervious surface area exacerbating selection pressure on avian mass at hatching.

EVOLUTIONARY APPLICATIONS (2021)

Article Ecology

Effects of Urbanization and Landscape on Gut Microbiomes in White-Crowned Sparrows

Mae Berlow et al.

Summary: Habitats are rapidly changing due to urbanization, affecting food availability, environmental stressors, and disease prevalence for many species, leading to divergence in phenotypic traits between urban and rural populations. Recent research shows urbanization is also altering gut microbial communities in a diverse group of host species, with urban and rural bird microbiomes differing in the variables predicting their diversity.

MICROBIAL ECOLOGY (2021)

Article Multidisciplinary Sciences

Plasma Hsp90 levels in patients with systemic sclerosis and relation to lung and skin involvement: a cross-sectional and longitudinal study

Hana Storkanova et al.

Summary: According to the study, plasma levels of Hsp90 are increased in patients with systemic sclerosis compared to healthy controls, and are associated with increased inflammatory activity, worsened lung function, and extent of skin involvement in patients with diffuse cutaneous systemic sclerosis. In patients with systemic sclerosis-associated interstitial lung disease treated with cyclophosphamide, baseline Hsp90 levels can predict changes in DLCO over 12 months of therapy.

SCIENTIFIC REPORTS (2021)

Article Microbiology

Seasonal shifts in the gut microbiome indicate plastic responses to diet in wild geladas

Alice Baniel et al.

Summary: This study investigated the environmental drivers of gut microbial composition in wild Ethiopian geladas, focusing on the impact of rainfall and temperature on the gut microbiome. The results showed distinct responses to dietary and thermoregulatory challenges, with rainfall influencing cellulolytic/fermentative bacteria dominance and temperature impacting energy and metabolic gene expression in the gut. These findings highlight the role of gut microbiota plasticity in providing dietary and metabolic flexibility to the host in changing environments.

MICROBIOME (2021)

Article Microbiology

The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch

Oncu Maraci et al.

Summary: Microbial communities in the gastrointestinal tracts of animals have significant impacts on host physiological processes. Host-specific and environmental factors interact in shaping gut microbial communities in humans, resulting in inter-individual differences. However, the extent to which microbes are individual-specific and controlled by host-specific factors across different animal taxa remains not fully understood.

FRONTIERS IN MICROBIOLOGY (2021)

Article Environmental Sciences

Urban metal pollution explains variation in reproductive outputs in great tits and blue tits

Marion Chatelain et al.

Summary: The study found that urban MTE pollution has negative effects on the reproductive outputs of great tits and blue tits, especially copper and arsenic concentrations affecting nestling weight and fledging success. Among the three biological materials, MTE concentrations in nestling feathers were more closely correlated with reproductive success. These results highlight the impact of MTE absorption on individual fitness and emphasize the importance of investigating MTE exposure using nestling feathers in hole-nesting bird species.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Multidisciplinary Sciences

Continent-wide genomic signatures of adaptation to urbanisation in a songbird across Europe

Pablo Salmon et al.

Summary: The study reveals that urban adaptation in great tits is driven by a combination of polygenic allele frequency shifts and recurrent selective sweeps, mostly within genes related to neural function and development. Selective sweeps in a core-set of behaviour-linked genes contribute to the adaptation of great tits to urban environments, with unique and shared sweeps occurring in different populations.

NATURE COMMUNICATIONS (2021)

Article Biology

Diet contributes to urban-induced alterations in gut microbiota: experimental evidence from a wild passerine

Aimeric Teyssier et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)

Article Microbiology

Viruses in the Built Environment (VIBE) meeting report

Aaron J. Prussin et al.

MICROBIOME (2020)

Review Microbiology

The Effects of Temperature on Animal Gut Microbiomes

Juan Sepulveda et al.

FRONTIERS IN MICROBIOLOGY (2020)

Article Multidisciplinary Sciences

Diet induces parallel changes to the gut microbiota and problem solving performance in a wild bird

Gabrielle L. Davidson et al.

SCIENTIFIC REPORTS (2020)

Article Behavioral Sciences

Quantifying human presence in a heterogeneous urban landscape

Michela Corsini et al.

BEHAVIORAL ECOLOGY (2019)

Article Biodiversity Conservation

Traffic noise exposure depresses plasma corticosterone and delays offspring growth in breeding zebra finches

Sue Anne Zollinger et al.

CONSERVATION PHYSIOLOGY (2019)

Article Environmental Sciences

Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine

Aimeric Teyssier et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2018)

Article Behavioral Sciences

Multidimensional environmental predictors of variation in avian forest and city life histories

Philipp Sprau et al.

BEHAVIORAL ECOLOGY (2017)

Article Forestry

Microclimate in tree cavities and nest-boxes: Implications for hole-nesting birds

Marta Maziarz et al.

FOREST ECOLOGY AND MANAGEMENT (2017)

Article Multidisciplinary Sciences

Global urban signatures of phenotypic change in animal and plant populations

Marina Alberti et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Early-life disruption of amphibian microbiota decreases later-life resistance to parasites

Sarah A. Knutie et al.

NATURE COMMUNICATIONS (2017)

Review Immunology

Gut Dysbiosis in Animals Due to Environmental Chemical Exposures

Cheryl S. Rosenfeld

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2017)

Article Microbiology

Effects of environmental temperature on the gut microbial communities of tadpoles

Kevin D. Kohl et al.

ENVIRONMENTAL MICROBIOLOGY (2016)

Article Environmental Sciences

When ambient noise impairs parent-offspring communication

Carsten Lucass et al.

ENVIRONMENTAL POLLUTION (2016)

Article Computer Science, Interdisciplinary Applications

Fitting Linear Mixed-Effects Models Using lme4

Douglas Bates et al.

JOURNAL OF STATISTICAL SOFTWARE (2015)

Article Environmental Sciences

High-Resolution Imagery of Earth at Night: New Sources, Opportunities and Challenges

Christopher C. M. Kyba et al.

REMOTE SENSING (2015)

Review Biochemistry & Molecular Biology

Microbiota and neurodevelopmental windows: implications for brain disorders

Yuliya E. Borre et al.

TRENDS IN MOLECULAR MEDICINE (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Review Microbiology

The gut microbiota - masters of host development and physiology

Felix Sommer et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Animals in a bacterial world, a new imperative for the life sciences

Margaret McFall-Ngai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Entomology

Invertebrates in urban areas: A review

Elizabeth L. Jones et al.

EUROPEAN JOURNAL OF ENTOMOLOGY (2012)

Article Biochemistry & Molecular Biology

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

Karen E. Sullam et al.

MOLECULAR ECOLOGY (2012)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Diversity and temporal stability of bacterial communities in a model passerine bird, the zebra finch

Clare McW. H. Benskin et al.

MOLECULAR ECOLOGY (2010)

Review Immunology

Immune adaptations that maintain homeostasis with the intestinal microbiota

Lora V. Hooper et al.

NATURE REVIEWS IMMUNOLOGY (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Review Biology

Bacterial pathogens in wild birds: a review of the frequency and effects of infection

Clare McW. H. Benskin et al.

BIOLOGICAL REVIEWS (2009)

Article Ornithology

Habitat quality, nestling diet, and provisioning behaviour in great tits Parus major

Teddy A. Wilkin et al.

JOURNAL OF AVIAN BIOLOGY (2009)

Review Microbiology

Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution

Ilana Zilber-Rosenberg et al.

FEMS MICROBIOLOGY REVIEWS (2008)

Article Biotechnology & Applied Microbiology

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

Catherine A. Lozupone et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Microbiology

Microbial biogeography:: putting microorganisms on the map

JBH Martiny et al.

NATURE REVIEWS MICROBIOLOGY (2006)

Article Agriculture, Dairy & Animal Science

Effects of specific noise and music stimuli on stress and fear levels of laying hens of several breeds

JL Campo et al.

APPLIED ANIMAL BEHAVIOUR SCIENCE (2005)

Review Ornithology

Diversity of the Bialowieza Forest avifauna in space and time

L Tomialojc et al.

JOURNAL OF ORNITHOLOGY (2004)

Article Food Science & Technology

Campylobacter, Salmonella, Shigella and Escherichia coli in live and dressed poultry from metropolitan Accra

BA Sackey et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2001)