4.7 Article

The Pre-Analytical CEN/TS Standard for Microbiome Diagnostics-How Can Research and Development Benefit?

Related references

Note: Only part of the references are listed.
Editorial Material Biochemistry & Molecular Biology

Development of Microbiome Biobanks - Challenges and Opportunities

M. J. Ryan et al.

Summary: The microbiome research field is rapidly advancing and requires a well-established biobanking infrastructure for preserving microbiome samples and their functional potential. There is an urgent need for assessing how biobanks can support research in this rapidly evolving field.

TRENDS IN MICROBIOLOGY (2021)

Article Gastroenterology & Hepatology

The Healthy Microbiome-What Is the Definition of a Healthy Gut Microbiome?

Fergus Shanahan et al.

Summary: Defining a healthy microbiome in different populations is crucial, but requires improved profiling technologies and understanding the variations and influences on the microbiome among apparently healthy individuals.

GASTROENTEROLOGY (2021)

Article Biochemistry & Molecular Biology

Reporting guidelines for human microbiome research: the STORMS checklist

Chloe Mirzayi et al.

Summary: The STORMS tool is a reporting guideline for human microbiome studies, consisting of a 17-item checklist to help researchers report study results concisely and completely, facilitating manuscript preparation, peer review, and reader comprehension.

NATURE MEDICINE (2021)

Article Multidisciplinary Sciences

Microbiome research in general and business newspapers: How many microbiome articles are published and which study designs make the news the most?

Andreu Prados-Bo et al.

Summary: The microbiome has attracted increasing attention in academic journals and newspapers from 2008 to 2018. News stories in general and business newspapers tend to focus more on research findings, particularly observational studies in humans, while environmental studies receive less coverage compared to PubMed.

PLOS ONE (2021)

Review Biochemical Research Methods

Current challenges and best-practice protocols for microbiome analysis

Richa Bharti et al.

Summary: Analyzing the microbiome using next-generation sequencing techniques has improved our understanding of environmental microorganisms. However, analysis is affected by experimental conditions and downstream analysis, and new sequencing technologies can impact results. This work aims to review important workflows for sequencing data and provide best-practice protocols.

BRIEFINGS IN BIOINFORMATICS (2021)

Review Medical Laboratory Technology

Microbiome Diagnostics

Robert Schlaberg

CLINICAL CHEMISTRY (2020)

Letter Microbiology

Microbiome definition re-visited: old concepts and new challenges

Gabriele Berg et al.

MICROBIOME (2020)

Review Pathology

Microbiome applications for pathology: challenges of low microbial biomass samples during diagnostic testing

Caitlin A. Selway et al.

JOURNAL OF PATHOLOGY CLINICAL RESEARCH (2020)

Review Medicine, General & Internal

Optimization of fecal sample processing for microbiome study - The journey from bathroom to bench

Wei-Kai Wu et al.

JOURNAL OF THE FORMOSAN MEDICAL ASSOCIATION (2019)

Article Hematology

Pre- and postanalytical errors in haematology

Barbara De la Salle

INTERNATIONAL JOURNAL OF LABORATORY HEMATOLOGY (2019)

Editorial Material Multidisciplinary Sciences

What's next for the human microbiome?

Lita Proctor

NATURE (2019)

Article Biotechnology & Applied Microbiology

Identification and removal of contaminating microbial DNA from PCR reagents: impact on low-biomass microbiome analyses

L. F. Stinson et al.

LETTERS IN APPLIED MICROBIOLOGY (2019)

Article Cell Biology

Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health

Petr Holub et al.

BIOPRESERVATION AND BIOBANKING (2018)

Review Microbiology

Best practices for analysing microbiomes

Rob Knight et al.

NATURE REVIEWS MICROBIOLOGY (2018)

Article Cell Biology

Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health

Petr Holub et al.

BIOPRESERVATION AND BIOBANKING (2018)

Article Microbiology

Robust Microbiota-Based Diagnostics for Inflammatory Bowel Disease

A. Eck et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2017)

Review Dermatology

Performing Skin Microbiome Research: A Method to the Madness

Heidi H. Kong et al.

JOURNAL OF INVESTIGATIVE DERMATOLOGY (2017)

Article Biotechnology & Applied Microbiology

Towards standards for human fecal sample processing in metagenomic studies

Paul I. Costea et al.

NATURE BIOTECHNOLOGY (2017)

Review Microbiology

Optimizing methods and dodging pitfalls in microbiome research

Dorothy Kim et al.

MICROBIOME (2017)

Article Microbiology

Multicenter quality assessment of 16S ribosomal DNA-sequencing for microbiome analyses reveals high inter-center variability

Andreas Hiergeist et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2016)

Editorial Material Multidisciplinary Sciences

IS THERE A REPRODUCIBILITY CRISIS?

Monya Baker

NATURE (2016)

Article Microbiology

An assessment of US microbiome research

Elizabeth Stulberg et al.

NATURE MICROBIOLOGY (2016)

Editorial Material Medicine, General & Internal

Measurement Is Essential for Improving Diagnosis and Reducing Diagnostic Error A Report From the Institute of Medicine

Elizabeth A. McGlynn et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2015)

Article Biochemistry & Molecular Biology

The Economics of Reproducibility in Preclinical Research

Leonard P. Freedman et al.

PLOS BIOLOGY (2015)

Article Pathology

Impaired autophagy response in human hepatocellular carcinoma

Lili Bao et al.

EXPERIMENTAL AND MOLECULAR PATHOLOGY (2014)

Review Biotechnology & Applied Microbiology

PCR inhibitors - occurrence, properties and removal

C. Schrader et al.

JOURNAL OF APPLIED MICROBIOLOGY (2012)

Article Multidisciplinary Sciences

Structure, function and diversity of the healthy human microbiome

Curtis Huttenhower et al.

NATURE (2012)

Article Multidisciplinary Sciences

A human gut microbial gene catalogue established by metagenomic sequencing

Junjie Qin et al.

NATURE (2010)

Review Medical Laboratory Technology

The detection and prevention of errors in laboratory medicine

Mario Plebani

ANNALS OF CLINICAL BIOCHEMISTRY (2010)

Article Multidisciplinary Sciences

The Human Microbiome Project

Peter J. Turnbaugh et al.

NATURE (2007)