Related references
Note: Only part of the references are listed.Quantitative image analysis of microbial communities with BiofilmQ
Raimo Hartmann et al.
NATURE MICROBIOLOGY (2021)
The oralome and its dysbiosis: New insights into oral microbiome-host interactions
Allan Radaic et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2021)
Unravelling interspecies interactions across heterogeneities in complex biofilm communities
Henriette L. Roder et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
Large-sized planktonic bioaggregates possess high biofilm formation potentials: Bacterial succession and assembly in the biofilm metacommunity
Ronghua Xu et al.
WATER RESEARCH (2020)
Investigation of synovial fluid induced Staphylococcus aureus aggregate development and its impact on surface attachment and biofilm formation
Matthew J. Pestrak et al.
PLOS ONE (2020)
Spatial mapping of polymicrobial communities reveals a precise biogeography associated with human dental caries
Dongyeop Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Biofilm Matrixome: Extracellular Components in Structured Microbial Communities
L. Karygianni et al.
TRENDS IN MICROBIOLOGY (2020)
Dynamics of bacterial population growth in biofilms resemble spatial and structural aspects of urbanization
Amauri J. Paula et al.
NATURE COMMUNICATIONS (2020)
Spatial Ecology of the Human Tongue Dorsum Microbiome
Steven A. Wilbert et al.
CELL REPORTS (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments
Erik L. Clarke et al.
MICROBIOME (2019)
Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
Joshua Ladau et al.
TRENDS IN MICROBIOLOGY (2019)
Biogeography of the Oral Microbiome: The Site-Specialist Hypothesis
Jessica L. Mark Welch et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 73 (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Multicellular behaviour enables cooperation in microbial cell aggregates
Ali Ebrahimi et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Bacterial adhesion at the single-cell level
Cecile Berne et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Oral Biofilms: Pathogens, Matrix, and Polymicrobial Interactions in Microenvironments
William H. Bowen et al.
TRENDS IN MICROBIOLOGY (2018)
Topical ferumoxytol nanoparticles disrupt biofilms and prevent tooth decay in vivo via intrinsic catalytic activity
Yuan Liu et al.
NATURE COMMUNICATIONS (2018)
Glycan recognition at the saliva - oral microbiome interface
Benjamin W. Cross et al.
CELLULAR IMMUNOLOGY (2018)
On the ecosystemic network of saliva in healthy young adults
Egija Zaura et al.
ISME JOURNAL (2017)
Interbacterial Adhesion Networks within Early Oral Biofilms of Single Human Hosts
Robert J. Palmer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
Microbial Diversity in the Early In Vivo-Formed Dental Biofilm
D. Heller et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Shaping the Growth Behaviour of Biofilms Initiated from Bacterial Aggregates
Gavin Melaugh et al.
PLOS ONE (2016)
Biogeography of a human oral microbiome at the micron scale
Jessica L. Mark Welch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Role of Multicellular Aggregates in Biofilm Formation
Kasper N. Kragh et al.
MBIO (2016)
Revealing microbial recognition by specific antibodies
Aurea Simon-Soro et al.
BMC MICROBIOLOGY (2015)
Uses and limitations of green fluorescent protein as a viability marker in Enterococcus faecalis: An observational investigation
Michel A. Hoogenkamp et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2015)
Metabolic co-dependence gives rise to collective oscillations within biofilms
Jintao Liu et al.
NATURE (2015)
The Airyscan detector from ZEISS: confocal imaging with improved signal-to-noise ratio and super-resolution
Joseph Huff
NATURE METHODS (2015)
Microbiota diversity and gene expression dynamics in human oral biofilms
Alfonso Benitez-Paez et al.
BMC GENOMICS (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Metatranscriptomics reveals overall active bacterial composition in caries lesions
Aurea Simon-Soro et al.
JOURNAL OF ORAL MICROBIOLOGY (2014)
An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome
Anna Edlund et al.
MICROBIOME (2013)
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald et al.
ISME JOURNAL (2012)
Multispecies communities: interspecies interactions influence growth on saliva as sole nutritional source
Paul E. Kolenbrander
INTERNATIONAL JOURNAL OF ORAL SCIENCE (2011)
Oral multispecies biofilm development and the key role of cell-cell distance
Paul E. Kolenbrander et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Oral Biofilm Architecture on Natural Teeth
Vincent Zijnge et al.
PLOS ONE (2010)
Molecular characterization of subject-specific oral microflora during initial colonization of enamel
PI Diaz et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Identification of early microbial colonizers in human dental biofilm
J Li et al.
JOURNAL OF APPLIED MICROBIOLOGY (2004)
Development of a multispecies oral bacterial community in a saliva-conditioned flow cell
JS Foster et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Dental plaque as a microbial biofilm
PD Marsh
CARIES RESEARCH (2004)
Communication among oral bacteria
PE Kolenbrander et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2002)