4.7 Review

Evolving spatial conservation prioritization with intraspecific genetic data

Related references

Note: Only part of the references are listed.
Review Biodiversity Conservation

A quantitative review of abundance-based species distribution models

Conor Waldock et al.

Summary: The contributions of species to ecosystem functions or services depend on their presence and local abundance, but current predictive spatial models focus more on species occurrence rather than abundance. The study found significant variation in the performance of abundance-based models, with random forests providing the best predictions in certain scenarios.

ECOGRAPHY (2022)

Article Ecology

Population assignment tests uncover rare long-distance marine larval dispersal events

C. C. D'Aloia et al.

Summary: Long-distance dispersal in the coral reef fish Elacatinus lori was uncovered using genetic parentage analysis and population assignment tests. Low rates of gene flow were found between populations in the adult generation, and despite the potential for ocean currents to facilitate long-distance dispersal, the gene flow rate among settlers was also low. By combining these two methods, short- and long-distance dispersal can be identified effectively.

ECOLOGY (2022)

Article Fisheries

Close-kin methods to estimate census size and effective population size

Robin S. Waples et al.

Summary: Research has found that genetic methods and close-kin mark-recapture methods differ in estimating population size, but combining the two can provide a better assessment of both ecological and evolutionary processes.

FISH AND FISHERIES (2022)

Editorial Material Multidisciplinary Sciences

The Earth BioGenome Project 2020: Starting the clock

Harris A. Lewin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Multidisciplinary Sciences

Conservation genetics as a management tool: The five best-supported paradigms to assist the management of threatened species

Yvonne Willi et al.

Summary: Conservation genetics has explored the impact of population dynamics on population performance, viability, and evolutionary potential by predicting the relationship between population size and genetic marker diversity. A recent perspective challenging fundamental assumptions in this field calls for a summary of achievements and emerging patterns, as well as future research directions.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Editorial Material Ecology

The era of reference genomes in conservation genomics

Giulio Formenti et al.

Summary: Progress in genome sequencing has enabled the generation of large-scale reference genomes, representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, allowing comprehensive analyses in population and functional genomics, and are expected to revolutionize conservation genomics.

TRENDS IN ECOLOGY & EVOLUTION (2022)

Article Biodiversity Conservation

Incorporating putatively neutral and adaptive genomic data into marine conservation planning

Amanda Xuereb et al.

Summary: Recent studies have shown that using genetic data to guide spatial conservation prioritization can be influenced by distinguishing between neutral and adaptive markers, emphasizing the importance of defining objectives when choosing among various genomic metrics for conservation.

CONSERVATION BIOLOGY (2021)

Article Biodiversity Conservation

Evaluating surrogates of genetic diversity for conservation planning

Jeffrey O. Hanson et al.

Summary: This study evaluated the effectiveness of potential surrogate-based approaches for prioritizing protected-area systems based on microsatellite genetic data collected across the Iberian Peninsula for amphibian and reptilian species. Long-term environmental suitability did not effectively represent high genetic diversity sites, and geographic distances as well as resistance distances were not always effective surrogates for identifying sites with individuals of different genetic compositions.

CONSERVATION BIOLOGY (2021)

Article Biochemistry & Molecular Biology

Detecting population declines via monitoring the effective number of breeders (Nb)

Gordon Luikart et al.

Summary: Estimating the effective population size and effective number of breeders per year using computer simulations showed a bias of 5%-10% when using SNPs or microsatellites across different species. However, precision was higher for SNPs than for microsatellites, and confidence intervals were narrow enough to achieve high statistical power in rejecting null hypotheses for different true values of N-b and sample sizes.

MOLECULAR ECOLOGY RESOURCES (2021)

Review Biochemistry & Molecular Biology

Population genomics for wildlife conservation and management

Paul A. Hohenlohe et al.

Summary: Biodiversity is threatened globally, and population genomics has emerged as a valuable tool for wildlife conservation. By providing precise estimates of population features and identifying genetic variants, genomics can help assess populations' ability to adapt to environmental changes and enhance conservation efforts.

MOLECULAR ECOLOGY (2021)

Article Ecology

Population genomics and conservation management of a declining tropical rodent

Brenton von Takach et al.

Summary: The study on the threatened brush-tailed rabbit-rat population revealed strong population structuring, two distinct genomic lineages, and the importance of prioritizing populations to retain species-level genetic diversity. Analysis also indicated that approximately half of the total diversity occurs among lineages.

HEREDITY (2021)

Article Multidisciplinary Sciences

The crucial role of genome-wide genetic variation in conservation

Marty Kardos et al.

Summary: Conserving genome-wide genetic variation is generally the best approach to prevent inbreeding depression and loss of adaptive potential, while focusing on functional genetic variation is not always feasible and can often lead to misleading and counterproductive outcomes.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Ecology

Conserving intraspecific variation for nature's contributions to people

Simone Des Roches et al.

Summary: The rapid loss of intraspecific variation poses a hidden biodiversity crisis, yet it is often overlooked in biodiversity assessments. Intraspecific variation plays a crucial role in supporting ecosystem functions and nature's contributions to people. Collaborative research and new genomic tools are needed to further explore and conserve the value of intraspecific variation.

NATURE ECOLOGY & EVOLUTION (2021)

Article Biodiversity Conservation

Applying genomic data to seagrass conservation

Nikki Leanne Phair et al.

Summary: Utilizing genomic diversity in conservation planning can identify unique priority areas which may otherwise be overlooked based solely on habitat type. Omitting estuaries from protected areas networks may risk evolutionary important populations and associated ecosystem services, while different genetic diversity metrics can impact prioritization outcomes.

BIODIVERSITY AND CONSERVATION (2021)

Review Genetics & Heredity

Opportunities and challenges of macrogenetic studies

Deborah M. Leigh et al.

Summary: Macrogenetics, a rapidly emerging field, focuses on analyzing publicly accessible genetic datasets from thousands of species to explore large-scale patterns and predictors of intraspecific genetic variation. Despite its promising outlook, important limitations exist that need to be addressed for macrogenetics to reach its full potential.

NATURE REVIEWS GENETICS (2021)

Article Multidisciplinary Sciences

Balancing conservation priorities for nature and for people in Europe

Louise M. J. O'Connor et al.

Summary: The study highlights the importance of considering different values of nature together in conservation planning. While priorities for biodiversity better represent nature's contributions to people, different priorities rarely coincide, except in certain irreplaceable ecosystems. Theoretically, protecting an extra 5% of land has the potential to double conservation gains for biodiversity while also maintaining some essential nature's contributions to people, leading to co-benefits for both nature and people.

SCIENCE (2021)

Article Ecology

Areas of global importance for conserving terrestrial biodiversity, carbon and water

Martin Jung et al.

Summary: In order to achieve the goals of biodiversity and climate conventions, spatial guidance is needed to optimize land conservation strategies and balance multiple objectives. Prioritizing the top 30% and 50% of land areas can significantly contribute to carbon retention, water quality regulation, and species conservation targets. Fully protecting all species considered would require conservation efforts on approximately 70% of terrestrial land.

NATURE ECOLOGY & EVOLUTION (2021)

Article Ecology

Operationalizing ecological connectivity in spatial conservation planning with Marxan Connect

Remi M. Daigle et al.

METHODS IN ECOLOGY AND EVOLUTION (2020)

Review Genetics & Heredity

Phylogenetic tree building in the genomic age

Paschalia Kapli et al.

NATURE REVIEWS GENETICS (2020)

Editorial Material Ecology

Mutation load is the spectre of species conservation

Cock van Oosterhout

NATURE ECOLOGY & EVOLUTION (2020)

Article Biodiversity Conservation

Conservation planning for adaptive and neutral evolutionary processes

Jeffrey O. Hanson et al.

JOURNAL OF APPLIED ECOLOGY (2020)

Review Ecology

Advancing Systematic Conservation Planning for Ecosystem Services

Jaramar Villarreal-Rosas et al.

TRENDS IN ECOLOGY & EVOLUTION (2020)

Review Ecology

Protecting Biodiversity (in All Its Complexity): New Models and Methods

Laura J. Pollock et al.

TRENDS IN ECOLOGY & EVOLUTION (2020)

Article Biodiversity Conservation

A comparison of genetic and genomic approaches to represent evolutionary potential in conservation planning

Erica S. Nielsen et al.

BIOLOGICAL CONSERVATION (2020)

Review Evolutionary Biology

Estimated six per cent loss of genetic variation in wild populations since the industrial revolution

Deborah M. Leigh et al.

EVOLUTIONARY APPLICATIONS (2019)

Article Multidisciplinary Sciences

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

Orly Razgour et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Ecology

A new framework of spatial targeting for single-species conservation planning

Malcolm Burgess et al.

LANDSCAPE ECOLOGY (2019)

Article Ecology

The ecological importance of intraspecific variation

Simone Des Roches et al.

NATURE ECOLOGY & EVOLUTION (2018)

Article Evolutionary Biology

Differentiation measures for conservation genetics

Lou Jost et al.

EVOLUTIONARY APPLICATIONS (2018)

Article Evolutionary Biology

Diversity from genes to ecosystems: A unifying framework to study variation across biological metrics and scales

Oscar E. Gaggiotti et al.

EVOLUTIONARY APPLICATIONS (2018)

Article Biochemistry & Molecular Biology

Wild GWAS-association mapping in natural populations

Anna W. Santure et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Review Biochemistry & Molecular Biology

Demographic and genetic approaches to study dispersal in wild animal populations: A methodological review

Hugo Cayuela et al.

MOLECULAR ECOLOGY (2018)

Review Ecology

The Peril of Gene-Targeted Conservation

Marty Kardos et al.

TRENDS IN ECOLOGY & EVOLUTION (2018)

Article Multidisciplinary Sciences

Genetic relatedness reveals total population size of white sharks in eastern Australia and New Zealand

R. M. Hillary et al.

SCIENTIFIC REPORTS (2018)

Article Ecology

Limited dispersal explains the spatial distribution of siblings in a reef fish population

C. C. D'Aloia et al.

MARINE ECOLOGY PROGRESS SERIES (2018)

Article Ecology

raptr: Representative and adequate prioritization toolkit in R

Jeffrey O. Hanson et al.

METHODS IN ECOLOGY AND EVOLUTION (2018)

Review Biodiversity Conservation

Adapting systematic conservation planning for climate change

April E. Reside et al.

BIODIVERSITY AND CONSERVATION (2018)

Article Multidisciplinary Sciences

Incorporating seascape connectivity in conservation prioritisation

Rebecca Weeks

PLOS ONE (2017)

Article Multidisciplinary Sciences

Environmental and geographic variables are effective surrogates for genetic variation in conservation planning

Jeffrey O. Hanson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Ecology

Who Should Pick the Winners of Climate Change?

Michael S. Webster et al.

TRENDS IN ECOLOGY & EVOLUTION (2017)

Review Ecology

Revisiting Adaptive Potential, Population Size, and Conservation

Ary A. Hoffmann et al.

TRENDS IN ECOLOGY & EVOLUTION (2017)

Article Ecology

Spatial conservation prioritization of biodiversity spanning the evolutionary continuum

Silvia B. Carvalho et al.

NATURE ECOLOGY & EVOLUTION (2017)

Article Biodiversity Conservation

Multispecies genetic objectives in spatial conservation planning

Erica S. Nielsen et al.

CONSERVATION BIOLOGY (2017)

Article Ecology

Incorporating larval dispersal into MPA design for both conservation and fisheries

Nils C. Krueck et al.

ECOLOGICAL APPLICATIONS (2017)

Article Biochemistry & Molecular Biology

Marine Dispersal Scales Are Congruent over Evolutionary and Ecological Time

Malin L. Pinsky et al.

CURRENT BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Exhaustive search for conservation networks of populations representing genetic diversity

J. A. F. Diniz-Filho et al.

GENETICS AND MOLECULAR RESEARCH (2016)

Article Statistics & Probability

Close-Kin Mark-Recapture

Mark V. Bravington et al.

STATISTICAL SCIENCE (2016)

Article Ecology

Are molecular markers useful predictors of adaptive potential?

Elizabeth A. Mittell et al.

ECOLOGY LETTERS (2015)

Review Evolutionary Biology

Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era

Pierre-Alexandre Gagnaire et al.

EVOLUTIONARY APPLICATIONS (2015)

Article Biochemistry & Molecular Biology

Multi-objective optimization in systematic conservation planning and the representation of genetic variability among populations

S. Schlottfeldt et al.

GENETICS AND MOLECULAR RESEARCH (2015)

Article Multidisciplinary Sciences

Patterns, causes, and consequences of marine larval dispersal

Cassidy C. D'Aloia et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Marine & Freshwater Biology

Evolving coral reef conservation with genetic information

Maria Beger et al.

BULLETIN OF MARINE SCIENCE (2014)

Article Biodiversity Conservation

Geographical surrogates of genetic variation for selecting island populations for conservation

Rocio Ponce-Reyes et al.

DIVERSITY AND DISTRIBUTIONS (2014)

Article Multidisciplinary Sciences

Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia

Brent D. Mishler et al.

NATURE COMMUNICATIONS (2014)

Article Computer Science, Interdisciplinary Applications

Methods and workflow for spatial conservation prioritization using Zonation

Joona Lehtomaki et al.

ENVIRONMENTAL MODELLING & SOFTWARE (2013)

Letter Ecology

A school of red herring: reply to Frankham et al.

Ian G. Jamieson et al.

TRENDS IN ECOLOGY & EVOLUTION (2013)

Letter Ecology

50/500 rule and minimum viable populations: response to Jamieson and Allendorf

Richard Frankham et al.

TRENDS IN ECOLOGY & EVOLUTION (2013)

Article Biodiversity Conservation

Planning for optimal conservation of geographical genetic variability within species

Jose Alexandre Felizola Diniz-Filho et al.

CONSERVATION GENETICS (2012)

Review Genetics & Heredity

Molecular phylogenetics: principles and practice

Ziheng Yang et al.

NATURE REVIEWS GENETICS (2012)

Review Ecology

How does the 50/500 rule apply to MVPs?

Ian G. Jamieson et al.

TRENDS IN ECOLOGY & EVOLUTION (2012)

Article Ecology

Harnessing genomics for delineating conservation units

W. Chris Funk et al.

TRENDS IN ECOLOGY & EVOLUTION (2012)

Article Evolutionary Biology

Mapping evolutionary process: a multi-taxa approach to conservation prioritization

Henri A. Thomassen et al.

EVOLUTIONARY APPLICATIONS (2011)

Article Biodiversity Conservation

Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches

Gordon Luikart et al.

CONSERVATION GENETICS (2010)

Review Biochemistry & Molecular Biology

What can genetics tell us about population connectivity?

Winsor H. Lowe et al.

MOLECULAR ECOLOGY (2010)

Article Multidisciplinary Sciences

The value of spatial information in MPA network design

Christopher Costello et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biodiversity Conservation

Incorporating asymmetric connectivity into spatial decision making for conservation

Maria Beger et al.

CONSERVATION LETTERS (2010)

Review Biodiversity Conservation

Quantification of Extinction Risk: IUCN's System for Classifying Threatened Species

Georgina M. Mace et al.

CONSERVATION BIOLOGY (2008)

Article Biochemistry & Molecular Biology

The California Hotspots Project: identifying regions of rapid diversification of mammals

Edward Byrd Davis et al.

MOLECULAR ECOLOGY (2008)

Review Ecology

Identification of management units using population genetic data

Per J. Palsboll et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Article Ecology

Adaptive vs. neutral genetic diversity: implications for landscape genetics

Rolf Holderegger et al.

LANDSCAPE ECOLOGY (2006)

Article Biodiversity Conservation

Maximising phylogenetic diversity in the selection of networks of conservation areas

ASL Rodrigues et al.

BIOLOGICAL CONSERVATION (2002)

Article Biodiversity Conservation

A method for setting the size of plant conservation target areas

MA Burgman et al.

CONSERVATION BIOLOGY (2001)