4.6 Review

Looking lively: emerging principles of pseudokinase signaling

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Kincore: a web resource for structural classification of protein kinases and their inhibitors

Vivek Modi et al.

Summary: The study clustered kinase structures and provided an accessible resource Kincore, allowing users to query the database for conformational states and inhibitor types. This will aid in understanding the conformational dynamics of proteins and guide the development of inhibitors targeting specific states.

NUCLEIC ACIDS RESEARCH (2022)

Article Multidisciplinary Sciences

Structure of a Janus kinase cytokine receptor complex reveals the basis for dimeric activation

Caleb R. Glassman et al.

Summary: Cytokines signal through cell surface receptor dimers to initiate activation of intracellular JAKs. This study reports the cryo-electron microscopy structure of JAK1 complexed with a cytokine receptor, and investigates the role of oncogenic JAK1 mutations in signaling.

SCIENCE (2022)

Article Biochemistry & Molecular Biology

Type II Binders Targeting the GLR-Out Conformation of the Pseudokinase STRADα

Ryan H. B. Smith et al.

Summary: Pseudokinases, despite lacking catalytic function, may still retain the conformational switching properties of conventional protein kinases, as evidenced by the study on heavily substituted pseudokinase STRAD alpha. The research demonstrates the potential applicability of conformation-specific type II compounds in pseudokinase pharmacology by using structural modeling to identify interacting compounds and validating compound binding through biophysical methods.

BIOCHEMISTRY (2021)

Review Biochemistry & Molecular Biology

The ABCs of the atypical Fam20 secretory pathway kinases

Carolyn A. Worby et al.

Summary: The study of extracellular phosphorylation started in the late 19th century, leading to the identification of Fam20 family members as key regulators of secretory pathway components, impacting health and disease.

JOURNAL OF BIOLOGICAL CHEMISTRY (2021)

Article Multidisciplinary Sciences

Coronavirus replication-transcription complex: Vital and selective NMPylation of a conserved site in nsp9 by the NiRAN-RdRp subunit

Heiko Slanina et al.

Summary: The study reveals that coronavirus nsp12 has NMPylation activity, catalyzing the transfer of NMP to nsp9 and essential for virus replication. It also highlights the importance of the phosphoramidate active site in the NNE tripeptide sequence.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Article Biochemistry & Molecular Biology

Dimeric Structure of the Pseudokinase IRAK3 Suggests an Allosteric Mechanism for Negative Regulation

Sven M. Lange et al.

Summary: IRAK3 is a negative regulator of innate immune signaling, associated with asthma and cancer. By analyzing asthma-related mutations, a conserved surface on IRAK3 was found that may interact with IRAK4, proposing a model for the negative regulation of IRAK4 by IRAK3.

STRUCTURE (2021)

Review Biochemistry & Molecular Biology

From structure to the dynamic regulation of a molecular switch: A journey over 3 decades

Susan S. Taylor et al.

Summary: The Protein Data Bank has played a crucial role in the signaling community for over 30 years, facilitating information sharing between academics and industry. Through the study of protein kinases, particularly cAMP-dependent protein kinase, researchers have made significant discoveries including the importance of crystal packing in biological processes and disease relevance. Integrating crystallography with other techniques is opening up new possibilities for understanding intrinsically disordered regions and dynamic biological processes.

JOURNAL OF BIOLOGICAL CHEMISTRY (2021)

Article Multidisciplinary Sciences

Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis

Sarah E. Garnish et al.

Summary: Phosphorylation of MLKL by RIPK3 kinase leads to MLKL oligomerization, translocation, and membrane permeabilization to induce cell death. Monobodies can bind to the MLKL pseudokinase domain, revealing distinct conformations during activation and disengagement from RIPK3, a key regulatory step in necroptosis. These structural and functional studies shed light on the mechanism of MLKL activation and regulation in necroptosis.

NATURE COMMUNICATIONS (2021)

Article Biochemistry & Molecular Biology

The intracellular domains of the EphB6 and EphA10 receptor tyrosine pseudokinases function as dynamic signalling hubs

Lung-Yu Liang et al.

Summary: EphB6 and EphA10, classified as pseudokinase members of the Eph receptor family, play crucial roles in contact-dependent cell-cell communication by transmitting extracellular signals into intracellular cues. Despite their deregulation being strongly linked to proliferative diseases, their catalytically dead nature raises questions about how non-catalytic functions contribute to Eph receptor signaling homeostasis. This study characterized the biochemical properties and topology of their intracellular regions, revealing high flexibility and interactions between component domains, offering potential for pharmacological targeting against oncogenic signaling through ATP binding capabilities.

BIOCHEMICAL JOURNAL (2021)

Article Biochemistry & Molecular Biology

Structural and mechanistic basis for protein glutamylation by the kinase fold

Adam Osinski et al.

Summary: Studies reveal that Legionella effectors SidJ and its homolog SdjA adopt a kinase fold to regulate the activity of SidE ligases through glutamylation reaction, uncovering the structural and mechanistic basis in which the kinase fold catalyzes non-ribosomal amino acid ligations.

MOLECULAR CELL (2021)

Article Biochemistry & Molecular Biology

Choline kinase alpha 2 acts as a protein kinase to promote lipolysis of lipid droplets

Rui Liu et al.

Summary: Lipid droplets play a critical role in cancer cell growth and survival, and the protein CHKα2 is shown to be involved in promoting lipid droplet lipolysis, fatty acid oxidation, and brain tumor growth. Phosphorylation and acetylation levels of CHKα2 are positively correlated with poor prognosis in glioblastoma patients.

MOLECULAR CELL (2021)

Article Multidisciplinary Sciences

Activation loop phosphorylaton of a non-RD receptor kinase initiates plant innate immune signaling

Kyle W. Bender et al.

Summary: Receptor kinases are key in extracellular sensing and stress responses in plants, with leucine-rich repeat receptor kinases regulating responses to internal and external stimuli. The phosphorylation of cytoplasmic domains is crucial for activating RK complexes, but it is not a ubiquitous requirement for LRR-RK activation. Further studies on different protein kinase domains may provide insights into the regulation of LRR-RK complexes.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

Review Biochemistry & Molecular Biology

There's more to death than life: Noncatalytic functions in kinase and pseudokinase signaling

Peter D. Mace et al.

Summary: Protein kinases are known for their catalytic functions in cellular signaling, but recent research has shown that they also have noncatalytic roles. These noncatalytic activities, such as allosteric modulation and scaffolding, highlight the versatility of protein kinases as protein-protein interaction modules. Despite the challenges, targeting the noncatalytic functions of protein kinases with small molecules has significant potential in health and disease.

JOURNAL OF BIOLOGICAL CHEMISTRY (2021)

Review Biochemistry & Molecular Biology

The Ras switch in structural and historical perspective

Raphael Gasper et al.

BIOLOGICAL CHEMISTRY (2020)

Article Chemistry, Multidisciplinary

High-Resolution Structure and Inhibition of the Schizophrenia Linked Pseudokinase ULK4

Susmita Khamrui et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)

Article Multidisciplinary Sciences

The gluconeogenic enzyme PCK1 phosphorylates INSIG1/2 for lipogenesis

Daqian Xu et al.

NATURE (2020)

Article Biochemistry & Molecular Biology

Structural Insights into Pseudokinase Domains of Receptor Tyrosine Kinases

Joshua B. Sheetz et al.

MOLECULAR CELL (2020)

Review Biochemistry & Molecular Biology

Moonlighting functions of metabolic enzymes and metabolites in cancer

Chaoyun Pan et al.

MOLECULAR CELL (2020)

Article Biochemistry & Molecular Biology

Tracing the origin and evolution of pseudokinases across the tree of life

Annie Kwon et al.

SCIENCE SIGNALING (2019)

Article Multidisciplinary Sciences

Inhibition of bacterial ubiquitin ligases by SidJ-calmodulin catalysed glutamylation

Sagar Bhogaraju et al.

NATURE (2019)

Editorial Material Biochemistry & Molecular Biology

Glutamylation of Bacterial Ubiquitin Ligases by a Legionella Pseudokinase

Alan G. Sulpizio et al.

TRENDS IN MICROBIOLOGY (2019)

Article Biochemistry & Molecular Biology

Protein AMPylation by an Evolutionarily Conserved Pseudokinase

Anju Sreelatha et al.

Article Medicine, General & Internal

Phase 2 Trial of Selective Tyrosine Kinase 2 Inhibition in Psoriasis

Kim Papp et al.

NEW ENGLAND JOURNAL OF MEDICINE (2018)

Article Biochemistry & Molecular Biology

Substrate binding allosterically relieves autoinhibition of the pseudokinase TRIB1

Sam A. Jamieson et al.

SCIENCE SIGNALING (2018)

Editorial Material Biochemistry & Molecular Biology

Flipping ATP to AMPlify Kinase Functions

Joshua B. Sheetz et al.

Review Chemistry, Multidisciplinary

Enzymes Involved in AMPylation and deAMPylation

Amanda K. Casey et al.

CHEMICAL REVIEWS (2018)

Article Biochemistry & Molecular Biology

Overcoming resistance to HER2 inhibitors through state-specific kinase binding

Chris J. Novotny et al.

NATURE CHEMICAL BIOLOGY (2016)

Article Multidisciplinary Sciences

Structural basis of N-Myc binding by Aurora-A and its destabilization by kinase inhibitors

Mark W. Richards et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Biochemistry & Molecular Biology

Structural Basis for the Non-catalytic Functions of Protein Kinases

Jennifer E. Kung et al.

STRUCTURE (2016)

Article Biochemistry & Molecular Biology

The Tribbles 2 (TRB2) pseudokinase binds to ATP and autophosphorylates in a metal-independent manner

Fiona P. Bailey et al.

BIOCHEMICAL JOURNAL (2015)

Article Biochemistry & Molecular Biology

Lack of Evidence for PKM2 Protein Kinase Activity

Aaron M. Hosios et al.

MOLECULAR CELL (2015)

Article Multidisciplinary Sciences

ATP binding to the pseudokinase domain of JAK2 is critical for pathogenic activation

Henrik M. Hammaren et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Allosteric Effects of the Oncogenic RasQ61L Mutant on Raf-RBD

Susan K. Fetics et al.

STRUCTURE (2015)

Article Biochemistry & Molecular Biology

Molecular Mechanism of CCAAT-Enhancer Binding Protein Recruitment by the TRIB1 Pseudokinase

James M. Murphy et al.

STRUCTURE (2015)

Article Biochemistry & Molecular Biology

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

Peter V. Hornbeck et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

A robust methodology to subclassify pseudokinases based on their nucleotide-binding properties

James M. Murphy et al.

BIOCHEMICAL JOURNAL (2014)

Article Oncology

Drugging MYCN through an Allosteric Transition in Aurora Kinase A

William Clay Gustafson et al.

CANCER CELL (2014)

Article Biochemistry & Molecular Biology

The Leucine-Rich Repeat Receptor Kinase BIR2 Is a Negative Regulator of BAK1 in Plant Immunity

Thierry Halter et al.

CURRENT BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Structural insights into regulatory mechanisms of MO25-mediated kinase activation

Qian Hao et al.

JOURNAL OF STRUCTURAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Molecular basis for pseudokinase-dependent autoinhibition of JAK2 tyrosine kinase

Yibing Shan et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)

Article Multidisciplinary Sciences

Structure of the pseudokinase-kinase domains from protein kinase TYK2 reveals a mechanism for Janus kinase (JAK) autoinhibition

Patrick J. Lupardus et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Xylose phosphorylation functions as a molecular switch to regulate proteoglycan biosynthesis

Jianzhong Wen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

Structural analysis of the EGFR/HER3 heterodimer reveals the molecular basis for activating HER3 mutations

Peter Littlefield et al.

SCIENCE SIGNALING (2014)

Review Cell Biology

Day of the dead: pseudokinases and pseudophosphatases in physiology and disease

Veronika Reiterer et al.

TRENDS IN CELL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

A pickup in pseudokinase activity

Arvin C. Dar

BIOCHEMICAL SOCIETY TRANSACTIONS (2013)

Article Oncology

Oncogenic ERBB3 Mutations in Human Cancers

Bijay S. Jaiswal et al.

CANCER CELL (2013)

Article Biochemistry & Molecular Biology

Structural Characterization of the RLCK Family Member BSK8: A Pseudokinase with an Unprecedented Architecture

Christian Gruetter et al.

JOURNAL OF MOLECULAR BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Structure of a pseudokinase-domain switch that controls oncogenic activation of Jak kinases

Angela V. Toms et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Multidisciplinary Sciences

SGK196 Is a Glycosylation-Specific O-Mannose Kinase Required for Dystroglycan Function

Takako Yoshida-Moriguchi et al.

SCIENCE (2013)

Article Biochemistry & Molecular Biology

Structure of the MST4 in Complex with MO25 Provides Insights into Its Activation Mechanism

Zhubing Shi et al.

STRUCTURE (2013)

Article Cell Biology

The Insulin Receptor: Both a Prototypical and Atypical Receptor Tyrosine Kinase

Stevan R. Hubbard

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Assessing the range of kinase autoinhibition mechanisms in the insulin receptor family

Stephen C. Artim et al.

BIOCHEMICAL JOURNAL (2012)

Article Biochemistry & Molecular Biology

Interactions with WNK (With No Lysine) Family Members Regulate Oxidative Stress Response 1 and Ion Co-transporter Activity

Samarpita Sengupta et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Biochemistry & Molecular Biology

Role of N-Terminal Myristylation in the Structure and Regulation of cAMP-Dependent Protein Kinase

Adam C. Bastidas et al.

JOURNAL OF MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Crystal structures of the JAK2 pseudokinase domain and the pathogenic mutant V617F

Rajintha M. Bandaranayake et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

A Conserved Non-canonical Motif in the Pseudoactive Site of the ROP5 Pseudokinase Domain Mediates Its Effect on Toxoplasma Virulence

Michael L. Reese et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Review Biochemistry & Molecular Biology

Catalytic Control in the EGF Receptor and Its Connection to General Kinase Regulatory Mechanisms

Natalia Jura et al.

MOLECULAR CELL (2011)

Article Multidisciplinary Sciences

A Raf-induced allosteric transition of KSR stimulates phosphorylation of MEK

Damian F. Brennan et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

The pseudokinase domain of JAK2 is a dual-specificity protein kinase that negatively regulates cytokine signaling

Daniela Ungureanu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Pseudokinases-remnants of evolution or key allosteric regulators?

Elton Zeqiraj et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2010)

Article Multidisciplinary Sciences

Structural Comparison of Human Mammalian Ste20-Like Kinases

Christopher J. Record et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

ErbB3/HER3 intracellular domain is competent to bind ATP and catalyze autophosphorylation

Fumin Shi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

FAM20B is a kinase that phosphorylates xylose in the glycosaminoglycan-protein linkage region

Toshiyasu Koike et al.

BIOCHEMICAL JOURNAL (2009)

Article Biochemistry & Molecular Biology

Novel structural and regulatory features of rhoptry secretory kinases in Toxoplasma gondii

Wei Qiu et al.

EMBO JOURNAL (2009)

Article Biochemistry & Molecular Biology

The Pseudoactive Site of ILK Is Essential for Its Binding to α-Parvin and Localization to Focal Adhesions

Koichi Fukuda et al.

MOLECULAR CELL (2009)

Article Multidisciplinary Sciences

Structural analysis of the catalytically inactive kinase domain of the human EGF receptor 3

Natalia Jura et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

CASK functions as a Mg2+-independent neurexin kinase

Konark Mukherjee et al.

Article Biochemistry & Molecular Biology

Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II

Benjamin Stieglitz et al.

EMBO JOURNAL (2008)

Article Biochemistry & Molecular Biology

A Src-like inactive conformation in the Abl tyrosine kinase domain

Nicholas M. Levinson et al.

PLOS BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Structural and mechanistic insights into ras association domains of phospholipase C epsilon

TD Bunney et al.

MOLECULAR CELL (2006)

Review Cell Biology

Emerging roles of pseudokinases

Jerome Boudeau et al.

TRENDS IN CELL BIOLOGY (2006)

Review Microbiology

Plant and animal pathogen recognition receptors signal through non-RD kinases

Christopher Dardick et al.

PLOS PATHOGENS (2006)

Review Multidisciplinary Sciences

Protein kinase inhibitors: Insights into drug design from structure

MEM Noble et al.

SCIENCE (2004)

Review Biochemistry & Molecular Biology

Regulation of protein kinases: Controlling activity through activation segment conformation

B Nolen et al.

MOLECULAR CELL (2004)

Article Multidisciplinary Sciences

The protein kinase complement of the human genome

G Manning et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

Human hypertension caused by mutations in WNK kinases

FH Wilson et al.

SCIENCE (2001)

Review Chemistry, Multidisciplinary

Kinetic and catalytic mechanisms of protein kinases

JA Adams

CHEMICAL REVIEWS (2001)

Article Biochemistry & Molecular Biology

WNK1, a novel mammalian serine/threonine protein kinase lacking the catalytic lysine in subdomain II

BE Xu et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)