4.7 Review

Genome editing and beyond: what does it mean for the future of plant breeding?

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Removing the major allergen Bra j I from brown mustard (Brassica juncea) by CRISPR/Cas9

Juvenal Assou et al.

Summary: The study successfully demonstrated the potential of gene editing breeding to alleviate food allergies by removing or mutating the major allergen Bra j I in brown mustard using CRISPR/Cas9 technology.

PLANT JOURNAL (2022)

Article Agronomy

Development of herbicide resistance genes and their application in rice

Man Jin et al.

Summary: This article reviews the research and application progress of herbicide-resistant genes in rice worldwide. It discusses the working mechanisms, resistance mutations, and detoxification mechanisms of six herbicides. Examples of obtaining herbicide-resistant rice materials through various methods are provided. The current application, problems, solutions, and future prospects of herbicide-resistant rice are also discussed.

CROP JOURNAL (2022)

Article Biochemistry & Molecular Biology

Multiplex and optimization of dCas9-TV-mediated gene activation in plants

Xiangyu Xiong et al.

Summary: The study introduces a gene activator called dCas9-TV, which can simultaneously upregulate the OsGW7 and OsER1 genes in rice, achieving multi-gene coactivation and demonstrating widely applicable strategies for boosting transcriptional activation efficiency in plants.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2021)

Review Biotechnology & Applied Microbiology

Directed Evolution of CRISPR/Cas Systems for Precise Gene Editing

Rongming Liu et al.

Summary: CRISPR technology, a universal tool for genome engineering, has been revolutionizing biotechnology. The diverse Cas proteins with complex structures contain multiple evolutionarily conserved functional domains, and engineering key domains can modify the functions of CRISPR/Cas systems.

TRENDS IN BIOTECHNOLOGY (2021)

Review Plant Sciences

CRISPR/Cas-mediated chromosome engineering: opening up a new avenue for plant breeding

Michelle Roenspies et al.

Summary: The powerful CRISPR/Cas system has revolutionized plant breeding by enabling precise genome manipulation, moving beyond simply knocking in or out single genes to inducing targeted chromosomal rearrangements. This technique has the potential to transform plant breeding by altering genetic linkages between traits and overcoming natural obstacles to breeding processes like inversions. Recent breakthroughs in chromosome engineering in plants suggest potential applications in shaping plant chromosomes based on breeding needs.

JOURNAL OF EXPERIMENTAL BOTANY (2021)

Review Cell Biology

CRISPR technologies for precise epigenome editing

Muneaki Nakamura et al.

Summary: The review discusses CRISPR-based epigenome engineering technologies for modulating histone and DNA modifications, perturbing DNA and RNA regulatory elements, and chromatin organization. The epigenome involves complex cellular processes governing genomic activity. Repurposing prokaryotic CRISPR systems has enabled the development of diverse technologies in epigenome engineering.

NATURE CELL BIOLOGY (2021)

Review Biochemistry & Molecular Biology

Genome engineering for crop improvement and future agriculture

Caixia Gao

Summary: Genome editing has the potential to revolutionize plant breeding and address the challenge of feeding a growing population in the face of climate change. Newly developed techniques and strategies offer significant opportunities for plant improvement and crop production, but challenges must be overcome to realize the full potential of this technology.
Article Biochemistry & Molecular Biology

A route to de novo domestication of wild allotetraploid rice

Hong Yu et al.

Summary: The study presents a strategy for de novo domestication of wild allotetraploid rice and establishes necessary resources for this purpose, demonstrating the rapid improvement of agronomically important traits through gene editing.
Article Plant Sciences

New plant breeding techniques and their regulatory implications: An opportunity to advance metabolomics approaches

Eugenia M. A. Enfissi et al.

Summary: This article reviews the impact of biotechnological innovations on agricultural productivity, food nutrition, and chemical usage, introduces new plant breeding technologies, and discusses how they should be regulated to avoid unnecessary burden. It also highlights the potential of metabolomics technology in characterizing the outputs of new plant breeding technologies, beneficial from academic, biosafety, and industrial perspectives.

JOURNAL OF PLANT PHYSIOLOGY (2021)

Article Biochemical Research Methods

Novel CRISPR/Cas applications in plants: from prime editing to chromosome engineering

Teng-Kuei Huang et al.

Summary: In recent years, significant progress has been made in the field of plant genome editing using CRISPR/Cas technology. This includes the application of both natural and engineered Cas proteins, as well as the development of various gene editing techniques in plants.

TRANSGENIC RESEARCH (2021)

Review Plant Sciences

Improving rice salt tolerance by precision breeding in a new era

Showkat Ahmad Ganie et al.

Summary: Recent advancements in understanding salt tolerance mechanisms and the use of new technologies have opened up possibilities for improving rice breeding in saline soils, accelerating the development of high-quality salt-tolerant rice cultivars.

CURRENT OPINION IN PLANT BIOLOGY (2021)

Article Biochemical Research Methods

Regulatory approaches for genome edited agricultural plants in select countries and jurisdictions around the world

Jon Entine et al.

Summary: Genome editing in agriculture and food has resulted in new and improved crops and products. The commercialization of these may or may not require approval from regulatory authorities depending on the country or region. This paper provides an overview of the regulatory landscape governing genome edited agriculture and food products in selected countries and regions.

TRANSGENIC RESEARCH (2021)

Review Food Science & Technology

Should we still worry about the safety of GMO foods? Why and why not? A review

Tadesse Fikre Teferra

Summary: The global population is increasing at an alarming rate, posing a threat to the supplies of basic needs and services. However, population increase does not seem to be a common agenda for global scientists and political leaders, who are more focused on new technologies and products. The uncertainties related to genetic engineering of crops and their outputs are attracting more attention and controversy compared to the real difficulties the world is facing.

FOOD SCIENCE & NUTRITION (2021)

Review Plant Sciences

Precise plant genome editing using base editors and prime editors

Kutubuddin A. Molla et al.

Summary: The development of CRISPR-Cas systems has revolutionized genome editing in plant genetics and breeding. The inefficiency of HDR in many plant species has led to the development of base editing and prime editing technologies, which allow for precise changes at a single-base resolution in the target genome. This Review provides an overview of the current status of base editors and prime editors in plants, covering both technological developments and biological applications.

NATURE PLANTS (2021)

Article Food Science & Technology

A meta-analysis of projected global food demand and population at risk of hunger for the period 2010-2050

Michiel van Dijk et al.

Summary: Based on a review of 57 global food security projection and quantitative scenario studies published in the past two decades, it is projected that the total global food demand will increase by 35% to 56% by 2050, while the population at risk of hunger is expected to change by -91% to +8%. Both ranges are significantly lower than previous projections.

NATURE FOOD (2021)

Article Multidisciplinary Sciences

Are the current gRNA ranking prediction algorithms useful for genome editing in plants?

Fatima Naim et al.

PLOS ONE (2020)

Article Multidisciplinary Sciences

CRISPR-engineered T cells in patients with refractory cancer

Edward A. Stadtmauer et al.

SCIENCE (2020)

Article Plant Sciences

A modular cloning toolkit for genome editing in plants

Florian Hahn et al.

BMC PLANT BIOLOGY (2020)

Article Biotechnology & Applied Microbiology

Highly efficient homology-directed repair using CRISPR/Cpf1-geminiviral replicon in tomato

Tien Van Vu et al.

PLANT BIOTECHNOLOGY JOURNAL (2020)

Editorial Material Plant Sciences

Give CRISPR a Chance: the GeneSprout Initiative

Nick Vangheluwe et al.

TRENDS IN PLANT SCIENCE (2020)

Article Biotechnology & Applied Microbiology

Superior field performance of waxy corn engineered using CRISPR-Cas9

Huirong Gao et al.

NATURE BIOTECHNOLOGY (2020)

Article Biotechnology & Applied Microbiology

Prime genome editing in rice and wheat

Qiupeng Lin et al.

NATURE BIOTECHNOLOGY (2020)

Review Biotechnology & Applied Microbiology

Gene Editing Regulation and Innovation Economics

Agustina I. Whelan et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2020)

Article Multidisciplinary Sciences

Changing local recombination patterns in Arabidopsis by CRISPR/Cas mediated chromosome engineering

Carla Schmidt et al.

NATURE COMMUNICATIONS (2020)

Review Biochemistry & Molecular Biology

Computational approaches for effective CRISPR guide RNA design and evaluation

Guanqing Liu et al.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)

Review Plant Sciences

CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture

Kunling Chen et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 70 (2019)

Article Biology

Q&A: modern crop breeding for future food security

Kai P. Voss-Fels et al.

BMC BIOLOGY (2019)

Article Plant Sciences

Detection and Identification of Genome Editing in Plants: Challenges and Opportunities

Lutz Grohmann et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Engineering, Biomedical

Detection of unamplified target genes via CRISPR-Cas9 immobilized on a graphene field-effect transistor

Reza Hajian et al.

NATURE BIOMEDICAL ENGINEERING (2019)

Review Biochemistry & Molecular Biology

De Novo Domestication: An Alternative Route toward New Crops for the Future

Alisdair R. Fernie et al.

MOLECULAR PLANT (2019)

Review Biotechnology & Applied Microbiology

Breeding crops to feed 10 billion

Lee T. Hickey et al.

NATURE BIOTECHNOLOGY (2019)

Review Cell Biology

DNA double-strand break repair-pathway choice in somatic mammalian cells

Ralph Scully et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)

Article Biochemical Research Methods

DNA-free genome editing with preassembled CRISPR/Cas9 ribonucleoproteins in plants

Jongjin Park et al.

TRANSGENIC RESEARCH (2019)

Editorial Material Biochemistry & Molecular Biology

More precise, more universal and more specific - the next generation of RNA-guided endonucleases for genome editing

Marek Marzec et al.

FEBS JOURNAL (2019)

Article Multidisciplinary Sciences

Search-and-replace genome editing without double-strand breaks or donor DNA

Andrew V. Anzalone et al.

NATURE (2019)

Review Biotechnology & Applied Microbiology

Application of CRISPR/Cas9-mediated gene editing for the development of herbicide-resistant plants

Yun-Jeong Han et al.

PLANT BIOTECHNOLOGY REPORTS (2019)

Review Plant Sciences

DNA-Free Genome Editing: Past, Present and Future

Janina Metje-Sprink et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Biotechnology & Applied Microbiology

Low-gluten, nontransgenic wheat engineered with CRISPR/Cas9

Susana Sanchez-Leon et al.

PLANT BIOTECHNOLOGY JOURNAL (2018)

Article Biochemistry & Molecular Biology

CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens

Jean-Paul Concordet et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Plant Sciences

Genome editing in potato via CRISPR-Cas9 ribonucleoprotein delivery

Mariette Andersson et al.

PHYSIOLOGIA PLANTARUM (2018)

Article Biotechnology & Applied Microbiology

Allele exchange at the EPSPS locus confers glyphosate tolerance in cassava

Aaron W. Hummel et al.

PLANT BIOTECHNOLOGY JOURNAL (2018)

Review Mathematical & Computational Biology

Review of CRISPR/Cas9 sgRNA Design Tools

Yingbo Cui et al.

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES (2018)

Review Plant Sciences

The Rise and Rise of Nicotiana benthamiana: A Plant for All Reasons

Julia Bally et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 56 (2018)

Article Biotechnology & Applied Microbiology

De novo domestication of wild tomato using genome editing

Agustin Zsogon et al.

NATURE BIOTECHNOLOGY (2018)

Article Plant Sciences

Rapid improvement of domestication traits in an orphan crop by genome editing

Zachary H. Lemmon et al.

NATURE PLANTS (2018)

Article Multidisciplinary Sciences

Programmable base editing of A.T to G.C in genomic DNA without DNA cleavage

Nicole M. Gaudelli et al.

NATURE (2017)

Article Plant Sciences

Live-cell CRISPR imaging in plants reveals dynamic telomere movements

Steven Dreissig et al.

PLANT JOURNAL (2017)

Article Multidisciplinary Sciences

Profiling single-guide RNA specificity reveals a mismatch sensitive core sequence

Ting Zheng et al.

SCIENTIFIC REPORTS (2017)

Article Biotechnology & Applied Microbiology

The impact of Genetically Modified (GM) crops in modern agriculture: A review

Ruchir Raman

GM Crops & Food-Biotechnology in Agriculture and the Food Chain (2017)

Article Multidisciplinary Sciences

Efficient increase of γ-aminobutyric acid (GABA) content in tomato fruits by targeted mutagenesis

Satoko Nonaka et al.

SCIENTIFIC REPORTS (2017)

Article Biochemistry & Molecular Biology

Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing

Daniel Rodriguez-Leal et al.

Article Biotechnology & Applied Microbiology

Improving cold storage and processing traits in potato through targeted gene knockout

Benjamin M. Clasen et al.

PLANT BIOTECHNOLOGY JOURNAL (2016)

Review Biotechnology & Applied Microbiology

The Regulatory Status of Genome-edited Crops

Jeffrey D. Wolt et al.

PLANT BIOTECHNOLOGY JOURNAL (2016)

Article Multidisciplinary Sciences

Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage

Alexis C. Komor et al.

NATURE (2016)

Article Biotechnology & Applied Microbiology

Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells

Daesik Kim et al.

NATURE BIOTECHNOLOGY (2016)

Review Plant Sciences

Opportunities for Products of New Plant Breeding Techniques

Jan G. Schaart et al.

TRENDS IN PLANT SCIENCE (2016)

Article Multidisciplinary Sciences

The pangenome of an agronomically important crop plant Brassica oleracea

Agnieszka A. Golicz et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

Evolution of the Grain Dispersal System in Barley

Mohammad Pourkheirandish et al.

Article Biochemistry & Molecular Biology

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System

Bernd Zetsche et al.

Article Biotechnology & Applied Microbiology

DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins

Je Wook Woo et al.

NATURE BIOTECHNOLOGY (2015)

Article Multidisciplinary Sciences

The genome of cultivated sweet potato contains Agrobacterium T-DNAs with expressed genes: An example of a naturally transgenic food crop

Tina Kyndt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system

Kabin Xie et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

Targeted Mutagenesis in Zea mays Using TALENs and the CRISPR/Cas System

Zhen Liang et al.

JOURNAL OF GENETICS AND GENOMICS (2014)

Article Biotechnology & Applied Microbiology

Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew

Yanpeng Wang et al.

NATURE BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Improved soybean oil quality by targeted mutagenesis of the fatty acid desaturase 2 gene family

William Haun et al.

PLANT BIOTECHNOLOGY JOURNAL (2014)

Article Biochemistry & Molecular Biology

Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice

Wenzhi Jiang et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Yield Trends Are Insufficient to Double Global Crop Production by 2050

Deepak K. Ray et al.

PLOS ONE (2013)

Review Biotechnology & Applied Microbiology

Site-directed nucleases: a paradigm shift in predictable, knowledge-based plant breeding

Nancy Podevin et al.

TRENDS IN BIOTECHNOLOGY (2013)

Review Biotechnology & Applied Microbiology

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering

Thomas Gaj et al.

TRENDS IN BIOTECHNOLOGY (2013)

Article Genetics & Heredity

RNA-Guided Genome Editing for Target Gene Mutations in Wheat

Santosh Kumar Upadhyay et al.

G3-GENES GENOMES GENETICS (2013)

Article Biochemistry & Molecular Biology

Targeted chromosomal duplications and inversions in the human genome using zinc finger nucleases

Hyung Joo Lee et al.

GENOME RESEARCH (2012)

Letter Biotechnology & Applied Microbiology

High-efficiency TALEN-based gene editing produces disease-resistant rice

Ting Li et al.

NATURE BIOTECHNOLOGY (2012)

Article Multidisciplinary Sciences

In planta gene targeting

Friedrich Fauser et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

Martin Jinek et al.

SCIENCE (2012)

Article Biotechnology & Applied Microbiology

A TALE nuclease architecture for efficient genome editing

Jeffrey C. Miller et al.

NATURE BIOTECHNOLOGY (2011)

Review Plant Sciences

Repairing breaks in the plant genome: the importance of keeping it together

Wanda M. Waterworth et al.

NEW PHYTOLOGIST (2011)

Article Biochemistry & Molecular Biology

TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain

Ting Li et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

Tomas Cermak et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Genetics & Heredity

Genome editing with engineered zinc finger nucleases

Fyodor D. Urnov et al.

NATURE REVIEWS GENETICS (2010)

Article Biochemistry & Molecular Biology

Autonomous zinc-finger nuclease pairs for targeted chromosomal deletion

Cem Soellue et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Zinc finger nuclease-mediated transgene deletion

Joseph F. Petolino et al.

PLANT MOLECULAR BIOLOGY (2010)

Article Multidisciplinary Sciences

High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases

Feng Zhang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleases

Keishi Osakabe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Biographical-Item Multidisciplinary Sciences

Norman E. Borlaug (1914-2009) OBITUARY

M. S. Swaminathan

NATURE (2009)

Article Multidisciplinary Sciences

Precise genome modification in the crop species Zea mays using zinc-finger nucleases

Vipula K. Shukla et al.

NATURE (2009)

Article Biotechnology & Applied Microbiology

UN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation

Sylvia de Pater et al.

PLANT BIOTECHNOLOGY JOURNAL (2009)

Article Multidisciplinary Sciences

Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors

Jens Boch et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

Carola Engler et al.

PLOS ONE (2008)

Letter Plant Sciences

Cisgenesis and intragenesis, sisters in innovative plant breeding

Henk J. Schouten et al.

TRENDS IN PLANT SCIENCE (2008)

Review Cell Biology

Regulation of DNA double-strand break repair pathway choice

Meena Shrivastav et al.

CELL RESEARCH (2008)

Article Multidisciplinary Sciences

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene

Takao Komatsuda et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Plant Sciences

The intragenic approach as a new extension to traditional plant breeding

Caius M. Rommens et al.

TRENDS IN PLANT SCIENCE (2007)

Letter Biotechnology & Applied Microbiology

Do cisgenic plants warrant less stringent oversight?

Henk J. Schouten et al.

NATURE BIOTECHNOLOGY (2006)

Article Plant Sciences

Chimeric RNA/DNA oligonucleotide-directed gene targeting in rice

A Okuzaki et al.

PLANT CELL REPORTS (2004)

Article Biochemistry & Molecular Biology

FokI requires two specific DNA sites for cleavage

ÉS Vanamee et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Zinc finger proteins: new insights into structural and functional diversity

JH Laity et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2001)

Article Biotechnology & Applied Microbiology

Engineering herbicide-resistant maize using chimeric RNA/DNA oligonucleotides

T Zhu et al.

NATURE BIOTECHNOLOGY (2000)