Related references
Note: Only part of the references are listed.GENCODE 2021
Adam Frankish et al.
NUCLEIC ACIDS RESEARCH (2021)
SopA inactivation or reduced expression is selected in intracellular Salmonella and contributes to systemic Salmonella infection
Shuangshuang Ma et al.
RESEARCH IN MICROBIOLOGY (2021)
Analysis of Stop Codons within Prokaryotic Protein-Coding Genes Suggests Frequent Readthrough Events
Frida Belinky et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)
A Novel SXT/R391 Integrative and Conjugative Element Carries Two Copies of the blaNDM-1 Gene in Proteus mirabilis
Jintao He et al.
MSPHERE (2021)
A computational system for identifying operons based on RNA-seq data
Brian Tjaden
METHODS (2020)
Antibiotic resistance by high-level intrinsic suppression of a frameshift mutation in an essential gene
Douglas L. Huseby et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Cointegration as a mechanism for the evolution of a KPC-producing multidrug resistance plasmid in Proteus mirabilis
Xiaoting Hua et al.
EMERGING MICROBES & INFECTIONS (2020)
Proteogenomic analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster strains
Julia Bespyatykh et al.
JOURNAL OF PROTEOMICS (2019)
Live-Cell Single RNA Imaging Reveals Bursts of Translational Frameshifting
Kenneth Lyon et al.
MOLECULAR CELL (2019)
Typhoidal Salmonella: Distinctive virulence factors and pathogenesis
Rebecca Johnson et al.
CELLULAR MICROBIOLOGY (2018)
Evolution of Salmonella within Hosts
Jennifer R. Tanner et al.
TRENDS IN MICROBIOLOGY (2018)
A genomic overview of the population structure of Salmonella
Nabil-Fareed Alikhan et al.
PLOS GENETICS (2018)
Salmonella infection: Interplay between the bacteria and host immune system
Jonathan R. Kurtz et al.
IMMUNOLOGY LETTERS (2017)
Heterogeneity of Stop Codon Readthrough in Single Bacterial Cells and Implications for Population Fitness
Yongqiang Fan et al.
MOLECULAR CELL (2017)
The Evolution of Bacterial Genome Architecture
Louis-Marie Bobay et al.
FRONTIERS IN GENETICS (2017)
Olfactory receptor pseudo-pseudogenes
Lucia L. Prieto-Godino et al.
NATURE (2016)
The DNA polymerase III holoenzyme contains γ and is not a trimeric polymerase
Paul R. Dohrmann et al.
NUCLEIC ACIDS RESEARCH (2016)
Winding paths to simplicity: genome evolution in facultative insect symbionts
Wen-Sui Lo et al.
FEMS MICROBIOLOGY REVIEWS (2016)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
Taking the pseudo out of pseudogenes
Ian Goodhead et al.
CURRENT OPINION IN MICROBIOLOGY (2015)
Pseudogenization of sopA and sopE2 is functionally linked and contributes to virulence of Salmonella enterica serovar Typhi
L. M. Valenzuela et al.
INFECTION GENETICS AND EVOLUTION (2015)
Salmonella Typhi shdA: Pseudogene or allelic variant?
I. M. Urrutia et al.
INFECTION GENETICS AND EVOLUTION (2014)
Mycobacterial mistranslation is necessary and sufficient for rifampicin phenotypic resistance
Babak Javid et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Identification of the nature of reading frame transitions observed in prokaryotic genomes
Ivan Antonov et al.
NUCLEIC ACIDS RESEARCH (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae
Alexandra C. Schrimpe-Rutledge et al.
PLOS ONE (2012)
Net-1 frameshifting on a noncanonical sequence in a herpes simplex virus drug-resistant mutant is stimulated by nonstop mRNA
Dongli Pan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A Rab32-Dependent Pathway Contributes to Salmonella Typhi Host Restriction
Stefania Spano et al.
SCIENCE (2012)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
A Pilot Study of Bacterial Genes with Disrupted ORFs Reveals a Surprising Profusion of Protein Sequence Recoding Mediated by Ribosomal Frameshifting and Transcriptional Realignment
Virag Sharma et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
S. Typhimurium sseJ gene decreases the S. Typhi cytotoxicity toward cultured epithelial cells
A. Nicole Trombert et al.
BMC MICROBIOLOGY (2010)
Gallstones play a significant role in Salmonella spp. gallbladder colonization and carriage
Robert W. Crawford et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
The Extinction Dynamics of Bacterial Pseudogenes
Chih-Horng Kuo et al.
PLOS GENETICS (2010)
Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates
Zhengdong D. Zhang et al.
GENOME BIOLOGY (2010)
Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi
Kathryn E. Holt et al.
BMC GENOMICS (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Salmonella paratyphi C: Genetic Divergence from Salmonella choleraesuis and Pathogenic Convergence with Salmonella typhi
Wei-Qiao Liu et al.
PLOS ONE (2009)
Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways
Nicholas R. Thomson et al.
GENOME RESEARCH (2008)
Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
Nitin Gupta et al.
GENOME RESEARCH (2007)
Expression of extremely low levels of thymidine kinase from an acyclovir-resistant herpes simplex virus mutant supports reactivation from latently infected mouse trigeminal ganglia
Michael I. Besecker et al.
JOURNAL OF VIROLOGY (2007)
The genome of Salmonella enterica serovar typhi
Stephen Baker et al.
CLINICAL INFECTIOUS DISEASES (2007)
Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics
Nathan P. Manes et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Recoding in bacteriophages and bacterial IS elements
PV Baranov et al.
TRENDS IN GENETICS (2006)
Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
H Toh et al.
GENOME RESEARCH (2006)
An algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes
Y Zhang et al.
BIOINFORMATICS (2005)
Recognizing the pseudogenes in bacterial genomes
E Lerat et al.
NUCLEIC ACIDS RESEARCH (2005)
The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen
CH Chiu et al.
NUCLEIC ACIDS RESEARCH (2005)
The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola
L Gómez-Valero et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Conserved translational frameshift in dsDNA bacteriophage tail assembly genes
J Xu et al.
MOLECULAR CELL (2004)
GeneWise and genomewise
E Birney et al.
GENOME RESEARCH (2004)
Release factor 2 frameshifting sites in different bacteria
PV Baranov et al.
EMBO REPORTS (2002)
Computational and experimental analysis of microsatellites in rice (Oryza sativa L.):: Frequency, length variation, transposon associations, and genetic marker potential
S Temnykh et al.
GENOME RESEARCH (2001)
Massive gene decay in the leprosy bacillus
ST Cole et al.
NATURE (2001)
RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression
PV Baranov et al.
NUCLEIC ACIDS RESEARCH (2001)
Nonlinearity in genetic decoding: Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting
B Larsen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Share Paper
