4.6 Article

Bio-organic soil amendment promotes the suppression of Ralstonia solanacearum by inducing changes in the functionality and composition of rhizosphere bacterial communities

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

High-throughput cultivation and identification of bacteria from the plant root microbiota

Jingying Zhang et al.

Summary: The study established a straightforward protocol for high-throughput bacterial isolation from fresh root samples, allowing for cultivation of native bacteria from roots. Using a two-sided barcode polymerase chain reaction system enabled the identification of pure and heterogeneous bacterial cultures.

NATURE PROTOCOLS (2021)

Article Biotechnology & Applied Microbiology

Soil microbiome manipulation triggers direct and possible indirect suppression against Ralstonia solanacearum and Fusarium oxysporum

Xuhui Deng et al.

Summary: Manipulation of the soil microbiome composition can enhance soil resistance to pathogens, leading to a natural suppressive effect. This provides a promising strategy for disease control by reshaping the soil microbiome.

NPJ BIOFILMS AND MICROBIOMES (2021)

Article Environmental Sciences

Root-associated (rhizosphere and endosphere) microbiomes of the Miscanthus sinensis and their response to the heavy metal contamination

Xiaoxu Sun et al.

Summary: Metal contaminants strongly influence the microbial community structures of the root-associated microbiome of Miscanthus sinensis, with distinct root endophytic microbial community structures identified compared to the bulk and rhizosphere soil. Members affiliated with the order Rhizobiales are identified as the core microbiome residing in the root of M. sinensis, with enrichment of plant-growth promoting functions predicted within the root endosphere.

JOURNAL OF ENVIRONMENTAL SCIENCES (2021)

Article Multidisciplinary Sciences

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

Ling Xu et al.

Summary: Recent studies have shown that drought leads to significant and highly conserved changes in the root microbiome, involving carbohydrate and secondary metabolite transport functionalities, as well as bacterial iron transport and metabolism functionalities. Iron homeostasis within the root is impacted by drought stress, and the loss of a plant phytosiderophore iron transporter affects microbial community composition.

NATURE COMMUNICATIONS (2021)

Review Biotechnology & Applied Microbiology

Sphingomonas: from diversity and genomics to functional role in environmental remediation and plant growth

Sajjad Asaf et al.

CRITICAL REVIEWS IN BIOTECHNOLOGY (2020)

Article Biotechnology & Applied Microbiology

Toward a global picture of bacterial secondary metabolism

Mohammad R. Seyedsayamdost

JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2019)

Article Biotechnology & Applied Microbiology

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

Jingying Zhang et al.

NATURE BIOTECHNOLOGY (2019)

Article Multidisciplinary Sciences

The role of multiple global change factors in driving soil functions and microbial biodiversity

Matthias C. Rillig et al.

SCIENCE (2019)

Article Multidisciplinary Sciences

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

Victor J. Carrion et al.

SCIENCE (2019)

Editorial Material Plant Sciences

Embracing Community Ecology in Plant Microbiome Research

Francisco Dini-Andreote et al.

TRENDS IN PLANT SCIENCE (2018)

Article Multidisciplinary Sciences

Clustering huge protein sequence sets in linear time

Martin Steinegger et al.

NATURE COMMUNICATIONS (2018)

Article Biotechnology & Applied Microbiology

Rhizoshere microbiome structure alters to enable wilt resistance in tomato

Min-Jung Kwak et al.

NATURE BIOTECHNOLOGY (2018)

Article Ecology

High taxonomic variability despite stable functional structure across microbial communities

Stilianos Louca et al.

NATURE ECOLOGY & EVOLUTION (2017)

Article Ecology

Fungal invasion of the rhizosphere microbiome

Emilie Chapelle et al.

ISME JOURNAL (2016)

Review Biochemistry & Molecular Biology

A structural model for multimodular NRPS assembly lines

Mohamed A. Marahiel

NATURAL PRODUCT REPORTS (2016)

Editorial Material Multidisciplinary Sciences

Soil immune responses Soil microbiomes may be harnessed for plant health

Jos M. Raaijmakers et al.

SCIENCE (2016)

Article Ecology

Soil-Borne Microbiome: Linking Diversity to Function

Lucas W. Mendes et al.

MICROBIAL ECOLOGY (2015)

Article Multidisciplinary Sciences

Functional overlap of the Arabidopsis leaf and root microbiota

Yang Bai et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

Tilmann Weber et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

Sarah L. Lebeis et al.

SCIENCE (2015)

Review Biochemistry & Molecular Biology

Microbial Invasions: The Process, Patterns, and Mechanisms

Cyrus Alexander Mallon et al.

TRENDS IN MICROBIOLOGY (2015)

Article Microbiology

Diversity and Activity of Lysobacter Species from Disease Suppressive Soils

Ruth Gomez Exposito et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Microbiology

Involvement of both PKS and NRPS in antibacterial activity in Lysobacter enzymogenes OH11

Juan Zhang et al.

FEMS MICROBIOLOGY LETTERS (2014)

Article Multidisciplinary Sciences

Chemical-biogeographic survey of secondary metabolism in soil

Zachary Charlop-Powers et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Ecology

Microbial composition affects the functioning of estuarine sediments

Heather E. Reed et al.

ISME JOURNAL (2013)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Review Agronomy

Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. A review

Rogier F. Doornbos et al.

AGRONOMY FOR SUSTAINABLE DEVELOPMENT (2012)

Article Multidisciplinary Sciences

Defining the core Arabidopsis thaliana root microbiome

Derek S. Lundberg et al.

NATURE (2012)

Review Plant Sciences

The rhizosphere microbiome and plant health

Roeland L. Berendsen et al.

TRENDS IN PLANT SCIENCE (2012)

Review Plant Sciences

A Coevolutionary Framework for Managing Disease-Suppressive Soils

Linda L. Kinkel et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 49 (2011)

Review Engineering, Environmental

Role of organic amendments on enhanced bioremediation of heavy metal(loid) contaminated soils

Jin Hee Park et al.

JOURNAL OF HAZARDOUS MATERIALS (2011)

Article Multidisciplinary Sciences

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

Rodrigo Mendes et al.

SCIENCE (2011)

Article Soil Science

Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments

Christina L. M. Khodadad et al.

SOIL BIOLOGY & BIOCHEMISTRY (2011)

Review Biotechnology & Applied Microbiology

Stenotrophomonas and Lysobacter: ubiquitous plant-associated gamma-proteobacteria of developing significance in applied microbiology

A. C. Hayward et al.

JOURNAL OF APPLIED MICROBIOLOGY (2010)

Review Soil Science

Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases

Giuliano Bonanomi et al.

SOIL BIOLOGY & BIOCHEMISTRY (2010)

Article Ecology

Testing the functional significance of microbial community composition

Michael S. Strickland et al.

ECOLOGY (2009)

Review Microbiology

The versatility and adaptation of bacteria from the genus Stenotrophomonas

Robert P. Ryan et al.

NATURE REVIEWS MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

Resistance, resilience, and redundancy in microbial communities

Steven D. Allison et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biotechnology & Applied Microbiology

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Qiong Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta

A Schirmer et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Review Microbiology

Biological control of soil-borne pathogens by fluorescent pseudomonads

D Haas et al.

NATURE REVIEWS MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Quantification of Bacillus species in a wastewater treatment system by the molecular analyses

K Mori et al.

BIOTECHNOLOGY AND BIOPROCESS ENGINEERING (2004)

Article Biotechnology & Applied Microbiology

Specific and sensitive detection of Ralstonia solanacearum in soil on the basis of PCR amplification of fliC fragments

J Schonfeld et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)