Related references
Note: Only part of the references are listed.High-throughput cultivation and identification of bacteria from the plant root microbiota
Jingying Zhang et al.
NATURE PROTOCOLS (2021)
Soil microbiome manipulation triggers direct and possible indirect suppression against Ralstonia solanacearum and Fusarium oxysporum
Xuhui Deng et al.
NPJ BIOFILMS AND MICROBIOMES (2021)
Root-associated (rhizosphere and endosphere) microbiomes of the Miscanthus sinensis and their response to the heavy metal contamination
Xiaoxu Sun et al.
JOURNAL OF ENVIRONMENTAL SCIENCES (2021)
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics
Ling Xu et al.
NATURE COMMUNICATIONS (2021)
Sphingomonas: from diversity and genomics to functional role in environmental remediation and plant growth
Sajjad Asaf et al.
CRITICAL REVIEWS IN BIOTECHNOLOGY (2020)
The rhizosphere signature on the cell motility, biofilm formation and secondary metabolite production of a plant-associated Lysobacter strain
Francesca Brescia et al.
MICROBIOLOGICAL RESEARCH (2020)
Deliberate introduction of invisible invaders: A critical appraisal of the impact of microbial inoculants on soil microbial communities
Panji Cahya Mawarda et al.
SOIL BIOLOGY & BIOCHEMISTRY (2020)
Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression
Chengyuan Tao et al.
MICROBIOME (2020)
Disease-suppressive compost enhances natural soil suppressiveness against soil-borne plant pathogens: A critical review
Ugo De Corato
RHIZOSPHERE (2020)
Toward a global picture of bacterial secondary metabolism
Mohammad R. Seyedsayamdost
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2019)
NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice
Jingying Zhang et al.
NATURE BIOTECHNOLOGY (2019)
The role of multiple global change factors in driving soil functions and microbial biodiversity
Matthias C. Rillig et al.
SCIENCE (2019)
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
Victor J. Carrion et al.
SCIENCE (2019)
Continuous application of different organic additives can suppress tomato disease by inducing the healthy rhizospheric microbiota through alterations to the bulk soil microflora
Hongjun Liu et al.
PLANT AND SOIL (2018)
The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader's niche
C. A. Mallon et al.
ISME JOURNAL (2018)
Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean
Lucas William Mendes et al.
ISME JOURNAL (2018)
Decreasing soil microbial diversity is associated with decreasing microbial biomass under nitrogen addition
Chao Wang et al.
SOIL BIOLOGY & BIOCHEMISTRY (2018)
Embracing Community Ecology in Plant Microbiome Research
Francisco Dini-Andreote et al.
TRENDS IN PLANT SCIENCE (2018)
Clustering huge protein sequence sets in linear time
Martin Steinegger et al.
NATURE COMMUNICATIONS (2018)
Microflora that harbor the NRPS gene are responsible for Fusarium wilt disease-suppressive soil
Mengli Zhao et al.
APPLIED SOIL ECOLOGY (2018)
Comparative Metagenomic Analysis of Rhizosphere Microbial Community Composition and Functional Potentials under Rehmannia glutinosa Consecutive Monoculture
Linkun Wu et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)
Rhizoshere microbiome structure alters to enable wilt resistance in tomato
Min-Jung Kwak et al.
NATURE BIOTECHNOLOGY (2018)
High taxonomic variability despite stable functional structure across microbial communities
Stilianos Louca et al.
NATURE ECOLOGY & EVOLUTION (2017)
Bio-fertilizer application induces soil suppressiveness against Fusarium wilt disease by reshaping the soil microbiome
Wu Xiong et al.
SOIL BIOLOGY & BIOCHEMISTRY (2017)
Inducing the rhizosphere microbiome by biofertilizer application to suppress banana Fusarium wilt disease
Lin Fu et al.
SOIL BIOLOGY & BIOCHEMISTRY (2017)
Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium wilt disease
Wu Xiong et al.
SOIL BIOLOGY & BIOCHEMISTRY (2017)
Microbial and biochemical basis of a Fusarium wilt-suppressive soil
Jae-Yul Cha et al.
ISME JOURNAL (2016)
Fungal invasion of the rhizosphere microbiome
Emilie Chapelle et al.
ISME JOURNAL (2016)
Pipecolic Acid Orchestrates Plant Systemic Acquired Resistance and Defense Priming via Salicylic Acid-Dependent and -Independent Pathways
Friederike Bernsdorff et al.
PLANT CELL (2016)
A structural model for multimodular NRPS assembly lines
Mohamed A. Marahiel
NATURAL PRODUCT REPORTS (2016)
Soil immune responses Soil microbiomes may be harnessed for plant health
Jos M. Raaijmakers et al.
SCIENCE (2016)
An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability
S. Franz Bender et al.
TRENDS IN ECOLOGY & EVOLUTION (2016)
Role of phenazines and cyclic lipopeptides produced by pseudomonas sp CMR12a in induced systemic resistance on rice and bean
Zongwang Ma et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2016)
Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression
Jie Hu et al.
MBIO (2016)
Effect of biofertilizer for suppressing Fusarium wilt disease of banana as well as enhancing microbial and chemical properties of soil under greenhouse trial
Zongzhuan Shen et al.
APPLIED SOIL ECOLOGY (2015)
Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition
Andrzej Tkacz et al.
ISME JOURNAL (2015)
Soil-Borne Microbiome: Linking Diversity to Function
Lucas W. Mendes et al.
MICROBIAL ECOLOGY (2015)
Functional overlap of the Arabidopsis leaf and root microbiota
Yang Bai et al.
NATURE (2015)
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters
Tilmann Weber et al.
NUCLEIC ACIDS RESEARCH (2015)
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
Sarah L. Lebeis et al.
SCIENCE (2015)
Microbial Invasions: The Process, Patterns, and Mechanisms
Cyrus Alexander Mallon et al.
TRENDS IN MICROBIOLOGY (2015)
Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health
Zhong Wei et al.
NATURE COMMUNICATIONS (2015)
Diversity and Activity of Lysobacter Species from Disease Suppressive Soils
Ruth Gomez Exposito et al.
FRONTIERS IN MICROBIOLOGY (2015)
Distinct soil microbial diversity under long-term organic and conventional farming
Martin Hartmann et al.
ISME JOURNAL (2015)
Involvement of both PKS and NRPS in antibacterial activity in Lysobacter enzymogenes OH11
Juan Zhang et al.
FEMS MICROBIOLOGY LETTERS (2014)
Deep 16S rRNA Pyrosequencing Reveals a Bacterial Community Associated with Banana Fusarium Wilt Disease Suppression Induced by Bio-Organic Fertilizer Application
Zongzhuan Shen et al.
PLOS ONE (2014)
Chemical-biogeographic survey of secondary metabolism in soil
Zachary Charlop-Powers et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Two Bacillus amyloliquefaciens strains isolated using the competitive tomato root enrichment method and their effects on suppressing Ralstonia solanacearum and promoting tomato plant growth
Shiyong Tan et al.
CROP PROTECTION (2013)
Microbial community responses to anthropogenically induced environmental change: towards a systems approach
Andrew Bissett et al.
ECOLOGY LETTERS (2013)
Microbial composition affects the functioning of estuarine sediments
Heather E. Reed et al.
ISME JOURNAL (2013)
The role of the immune system in governing host-microbe interactions in the intestine
Eric M. Brown et al.
NATURE IMMUNOLOGY (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
NATURE METHODS (2013)
Evaluation of rhizosphere bacteria and derived bio-organic fertilizers as potential biocontrol agents against bacterial wilt (Ralstonia solanacearum) of potato
Chuanyu Ding et al.
PLANT AND SOIL (2013)
Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. A review
Rogier F. Doornbos et al.
AGRONOMY FOR SUSTAINABLE DEVELOPMENT (2012)
Control of cotton Verticillium wilt and fungal diversity of rhizosphere soils by bio-organic fertilizer
Jiaojiao Lang et al.
BIOLOGY AND FERTILITY OF SOILS (2012)
Defining the core Arabidopsis thaliana root microbiome
Derek S. Lundberg et al.
NATURE (2012)
The rhizosphere microbiome and plant health
Roeland L. Berendsen et al.
TRENDS IN PLANT SCIENCE (2012)
A Coevolutionary Framework for Managing Disease-Suppressive Soils
Linda L. Kinkel et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 49 (2011)
Efficacy of Bacillus-fortified organic fertiliser in controlling bacterial wilt of tomato in the field
Zhong Wei et al.
APPLIED SOIL ECOLOGY (2011)
Role of organic amendments on enhanced bioremediation of heavy metal(loid) contaminated soils
Jin Hee Park et al.
JOURNAL OF HAZARDOUS MATERIALS (2011)
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
Marnix H. Medema et al.
NUCLEIC ACIDS RESEARCH (2011)
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
Rodrigo Mendes et al.
SCIENCE (2011)
Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments
Christina L. M. Khodadad et al.
SOIL BIOLOGY & BIOCHEMISTRY (2011)
Stenotrophomonas and Lysobacter: ubiquitous plant-associated gamma-proteobacteria of developing significance in applied microbiology
A. C. Hayward et al.
JOURNAL OF APPLIED MICROBIOLOGY (2010)
Bacterial diversity in cucumber (Cucumis sativus) rhizosphere in response to salinity, soil pH, and boron
A. M. Ibekwe et al.
SOIL BIOLOGY & BIOCHEMISTRY (2010)
Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases
Giuliano Bonanomi et al.
SOIL BIOLOGY & BIOCHEMISTRY (2010)
Testing the functional significance of microbial community composition
Michael S. Strickland et al.
ECOLOGY (2009)
The versatility and adaptation of bacteria from the genus Stenotrophomonas
Robert P. Ryan et al.
NATURE REVIEWS MICROBIOLOGY (2009)
The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms
Jos M. Raaijmakers et al.
PLANT AND SOIL (2009)
Resistance, resilience, and redundancy in microbial communities
Steven D. Allison et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta
A Schirmer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Biological control of soil-borne pathogens by fluorescent pseudomonads
D Haas et al.
NATURE REVIEWS MICROBIOLOGY (2005)
New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: Detection and distribution of these biosynthetic gene sequences in major taxonomic groups
A Ayuso-Sacido et al.
MICROBIAL ECOLOGY (2005)
Quantification of Bacillus species in a wastewater treatment system by the molecular analyses
K Mori et al.
BIOTECHNOLOGY AND BIOPROCESS ENGINEERING (2004)
Developing disease-suppressive soils through crop rotation and tillage management practices
RD Peters et al.
SOIL & TILLAGE RESEARCH (2003)
Specific and sensitive detection of Ralstonia solanacearum in soil on the basis of PCR amplification of fliC fragments
J Schonfeld et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Novel features in a combined polyketide synthase/non-ribosomal peptide synthetase: the myxalamid biosynthetic gene cluster of the myxobacterium Stigmatella aurantiaca Sga15
B Silakowski et al.
CHEMISTRY & BIOLOGY (2001)