4.7 Article

WGS for surveillance of antimicrobial resistance: a pilot study to detect the prevalence and mechanism of resistance to azithromycin in a UK population of non-typhoidal Salmonella

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Identification of Salmonella for public health surveillance using whole genome sequencing

Philip M. Ashton et al.

PEERJ (2016)

Article Microbiology

Two Novel Salmonella Genomic Island 1 Variants in Proteus mirabilis Isolates from Swine Farms in China

Chang-Wei Lei et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)

Article Biochemical Research Methods

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

Ryan R. Wick et al.

BIOINFORMATICS (2015)

Article Microbiology

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

Alessandra Carattoli et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Microbiology

Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing

N. C. Gordon et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2014)

Article Immunology

Shigella spp. with Reduced Azithromycin Susceptibility, Quebec, Canada, 2012-2013

Christiane Gaudreau et al.

EMERGING INFECTIOUS DISEASES (2014)

Article Immunology

Salmonella Subtypes with Increased MICs for Azithromycin in Travelers Returned to the Netherlands

Robert-Jan Hassing et al.

EMERGING INFECTIOUS DISEASES (2014)

Article Infectious Diseases

Highly drug-resistant Salmonella enterica serotype Kentucky ST198-X1: a microbiological study

Simon Le Hello et al.

LANCET INFECTIOUS DISEASES (2013)

Article Infectious Diseases

Azithromycin and Ciprofloxacin Resistance in Salmonella Bloodstream Infections in Cambodian Adults

Erika R. Vlieghe et al.

PLOS NEGLECTED TROPICAL DISEASES (2012)

Editorial Material Microbiology

Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology

Claudio U. Koeser et al.

PLOS PATHOGENS (2012)

Article Microbiology

Antimicrobial Susceptibility to Azithromycin among Salmonella enterica Isolates from the United States

Maria Sjolund-Karlsson et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2011)

Article Biochemical Research Methods

Easyfig: a genome comparison visualizer

Mitchell J. Sullivan et al.

BIOINFORMATICS (2011)

Article Genetics & Heredity

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo et al.

NATURE GENETICS (2011)

Review Infectious Diseases

Enteric fever in a UK regional infectious diseases unit: A 10 year retrospective review

Tristan W. Clark et al.

JOURNAL OF INFECTION (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Immunology

Escherichia coli as Reservoir for Macrolide Resistance Genes

Minh Chau Phuc Nguyen et al.

EMERGING INFECTIOUS DISEASES (2009)

Review Infectious Diseases

Antimicrobial resistance in typhoidal and nontyphoidal salmonellae

Christopher M. Parry et al.

CURRENT OPINION IN INFECTIOUS DISEASES (2008)

Letter Immunology

Alternatives to ciprofloxacin use for enteric fever, United Kingdom

E. John Threlfall et al.

EMERGING INFECTIOUS DISEASES (2008)

Article Immunology

Macrolide-resistant Shigella sonnei

Leyla Boumghar-Bourtchai et al.

EMERGING INFECTIOUS DISEASES (2008)

Article Infectious Diseases

Resistance to macrolides in clinical isolates of Streptococcus pyogenes due to ribosomal mutations

B Malbruny et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2002)