Related references
Note: Only part of the references are listed.Identification of Salmonella for public health surveillance using whole genome sequencing
Philip M. Ashton et al.
PEERJ (2016)
Two Novel Salmonella Genomic Island 1 Variants in Proteus mirabilis Isolates from Swine Farms in China
Chang-Wei Lei et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)
IncA/C Plasmid Carrying blaNDM-1, blaCMY-16, and fosA3 in a Salmonella enterica Serovar Corvallis Strain Isolated from a Migratory Wild Bird in Germany
L. Villa et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)
Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
Ryan R. Wick et al.
BIOINFORMATICS (2015)
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study
Kate S. Baker et al.
LANCET INFECTIOUS DISEASES (2015)
Rapid Identification of Major Escherichia coli Sequence Types Causing Urinary Tract and Bloodstream Infections
M. Doumith et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Alessandra Carattoli et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Resistance to third-generation cephalosporins in human non-typhoidal Salmonella enterica isolates from England and Wales, 201012
Liam Burke et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2014)
Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing
N. C. Gordon et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Plasmid Flux in Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for Plasmid Reconstruction from Whole Genome Sequences
Val F. Lanza et al.
PLOS GENETICS (2014)
Shigella spp. with Reduced Azithromycin Susceptibility, Quebec, Canada, 2012-2013
Christiane Gaudreau et al.
EMERGING INFECTIOUS DISEASES (2014)
Salmonella Subtypes with Increased MICs for Azithromycin in Travelers Returned to the Netherlands
Robert-Jan Hassing et al.
EMERGING INFECTIOUS DISEASES (2014)
A retrospective study of secondary bacteraemia in hospitalised adults with community acquired non-typhoidal Salmonella gastroenteritis
Christopher M. Parry et al.
BMC INFECTIOUS DISEASES (2013)
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2013)
Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
N. Stoesser et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2013)
Highly drug-resistant Salmonella enterica serotype Kentucky ST198-X1: a microbiological study
Simon Le Hello et al.
LANCET INFECTIOUS DISEASES (2013)
Azithromycin and Ciprofloxacin Resistance in Salmonella Bloodstream Infections in Cambodian Adults
Erika R. Vlieghe et al.
PLOS NEGLECTED TROPICAL DISEASES (2012)
Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology
Claudio U. Koeser et al.
PLOS PATHOGENS (2012)
Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica
Mark Achtman et al.
PLOS PATHOGENS (2012)
Antimicrobial Susceptibility to Azithromycin among Salmonella enterica Isolates from the United States
Maria Sjolund-Karlsson et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2011)
Easyfig: a genome comparison visualizer
Mitchell J. Sullivan et al.
BIOINFORMATICS (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
First Report of Salmonella enterica Serotype Paratyphi A Azithromycin Resistance Leading to Treatment Failure
Aoife Molloy et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2010)
Enteric fever in a UK regional infectious diseases unit: A 10 year retrospective review
Tristan W. Clark et al.
JOURNAL OF INFECTION (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Escherichia coli as Reservoir for Macrolide Resistance Genes
Minh Chau Phuc Nguyen et al.
EMERGING INFECTIOUS DISEASES (2009)
Antimicrobial resistance in typhoidal and nontyphoidal salmonellae
Christopher M. Parry et al.
CURRENT OPINION IN INFECTIOUS DISEASES (2008)
Antimicrobial drug resistance in human nontyphoidal Salmonella isolates in Europe 2000-2004:: A report from the Enter-net international surveillance network
Sally Meakins et al.
MICROBIAL DRUG RESISTANCE (2008)
Alternatives to ciprofloxacin use for enteric fever, United Kingdom
E. John Threlfall et al.
EMERGING INFECTIOUS DISEASES (2008)
Macrolide-resistant Shigella sonnei
Leyla Boumghar-Bourtchai et al.
EMERGING INFECTIOUS DISEASES (2008)
Molecular characterization of Salmonella Typhimurium and Salmonella Enteritidis by plasmid analysis and pulsed-field gel electrophoresis
Zerrin Aktas et al.
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2007)
Multidrug-resistant and extended-spectrum beta-lactamase (ESBL)-producing Salmonella enterica (serotypes Typhi and Paratyphi A) from blood isolates in Nepal:: surveillance of resistance and a search for newer alternatives
Bharat M. Pokharel et al.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2006)
The mef(A) gene predominates among seven macrolide resistance genes identified in gram-negative strains representing 13 genera, isolated from healthy Portuguese children
KK Ojo et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2004)
Resistance to macrolides in clinical isolates of Streptococcus pyogenes due to ribosomal mutations
B Malbruny et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2002)
Mechanisms of resistance to macrolides and lincosamides: Nature of the resistance elements and their clinical implications
R Leclercq
CLINICAL INFECTIOUS DISEASES (2002)
Azithromycin versus ceftriaxone for the treatment of uncomplicated typhoid fever in children
RW Frenck et al.
CLINICAL INFECTIOUS DISEASES (2000)