4.7 Article

Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark

Related references

Note: Only part of the references are listed.
Article Microbiology

A Silenced vanA Gene Cluster on a Transferable Plasmid Caused an Outbreak of Vancomycin-Variable Enterococci

Audun Sivertsen et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2016)

Article Biochemical Research Methods

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page et al.

BIOINFORMATICS (2015)

Article Infectious Diseases

Environmental survival of vancomycin-sensitive ampicillin-resistant Enterococcus faecium (AREfm)

J. H. T. Wagenvoort et al.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2015)

Article Infectious Diseases

Multiple hospital outbreaks of vanA Enterococcus faecium in Denmark, 2012-13, investigated by WGS, MLST and PFGE

Mette Pinholt et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)

Article Infectious Diseases

Epidemiology and molecular typing of VRE bloodstream isolates in an Irish tertiary care hospital

L. Ryan et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)

Article Microbiology

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

Alessandra Carattoli et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Ross Overbeek et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biotechnology & Applied Microbiology

Molecular Analysis of VanA Outbreak of Enterococcus faecium in Two Warsaw Hospitals: The Importance of Mobile Genetic Elements

Ewa Wardal et al.

BIOMED RESEARCH INTERNATIONAL (2014)

Article Infectious Diseases

Genetic features and molecular epidemiology of Enterococcus faecium isolated in two university hospitals in Brazil

Leila Priscilla Pinheiro da Silva et al.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2012)

Article Infectious Diseases

Identification of acquired antimicrobial resistance genes

Ea Zankari et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)

Article Microbiology

Comparative Analysis of the First Complete Enterococcus faecium Genome

Margaret M. C. Lam et al.

JOURNAL OF BACTERIOLOGY (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biotechnology & Applied Microbiology

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

Xavier Didelot et al.

GENOME BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

Gerton Lunter et al.

GENOME RESEARCH (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Microbiology

Diversity of Tn1546 and its role in the dissemination of vancomycin-resistant enterococci in Portugal

Carla Novais et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2008)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Multidisciplinary Sciences

Toxin-antitoxin systems are ubiquitous and plasmid-encoded in vancomycin-resistant enterococci

Elizabeth M. Moritz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Infectious Diseases

How long do nosocomial pathogens persist on inanimate surfaces? A systematic review

Axel Kramer et al.

BMC INFECTIOUS DISEASES (2006)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biotechnology & Applied Microbiology

Versatile and open software for comparing large genomes

S Kurtz et al.

GENOME BIOLOGY (2004)