Related references
Note: Only part of the references are listed.Benchmarking Computational Doublet-Detection Methods for Single-Cell RNA Sequencing Data
Nan Miles Xi et al.
CELL SYSTEMS (2021)
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
Pall Melsted et al.
NATURE BIOTECHNOLOGY (2021)
An intercrypt subpopulation of goblet cells is essential for colonic mucus barrier function
Elisabeth E. L. Nystrom et al.
SCIENCE (2021)
Role of lysophosphatidic acid and its receptors in health and disease: novel therapeutic strategies
Luiz Henrique Medeiros Geraldo et al.
SIGNAL TRANSDUCTION AND TARGETED THERAPY (2021)
Commensal microbiota drive the functional diversification of colon macrophages
Byunghyun Kang et al.
MUCOSAL IMMUNOLOGY (2020)
Adrenergic Signaling in Muscularis Macrophages Limits Infection-Induced Neuronal Loss
Fanny Matheis et al.
CELL (2020)
Orchestrating single-cell analysis with Bioconductor
Robert A. Amezquita et al.
NATURE METHODS (2020)
Lysophosphatidic Acid-Mediated GPR35 Signaling in CX3CR1+ Macrophages Regulates Intestinal Homeostasis
Berna Kaya et al.
CELL REPORTS (2020)
Proximal colon-derived O-glycosylated mucus encapsulates and modulates the microbiota
Kirk Bergstrom et al.
SCIENCE (2020)
Structural weakening of the colonic mucus barrier is an early event in ulcerative colitis pathogenesis
Sjoerd van der Post et al.
GUT (2019)
Colonic epithelial cell diversity in health and inflammatory bowel disease
Kaushal Parikh et al.
NATURE (2019)
The barcode, UMI, set format and BUStools
Pall Melsted et al.
BIOINFORMATICS (2019)
Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis
Simone Herp et al.
CELL HOST & MICROBE (2019)
Compartmentalized gut lymph node drainage dictates adaptive immune responses
Daria Esterhazy et al.
NATURE (2019)
Metabolite-Sensing G Protein-Coupled Receptors Connect the Diet-Microbiota-Metabolites Axis to Inflammatory Bowel Disease
Hassan Melhem et al.
CELLS (2019)
A specific gene-microbe interaction drives the development of Crohn's disease-like colitis in mice
R. Caruso et al.
SCIENCE IMMUNOLOGY (2019)
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
Dvir Aran et al.
NATURE IMMUNOLOGY (2019)
GPR35 promotes glycolysis, proliferation, and oncogenic signaling by engaging with the sodium potassium pump
Georg Schneditz et al.
SCIENCE SIGNALING (2019)
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
Aaron T. L. Lun et al.
GENOME BIOLOGY (2019)
Pyroptosis and its relationship to atherosclerosis
Yuan-Jun Xu et al.
CLINICA CHIMICA ACTA (2018)
Emerging Insights into Noncanonical Inflammasome Recognition of Microbes
Ashley J. Russo et al.
JOURNAL OF MOLECULAR BIOLOGY (2018)
Detection and removal of barcode swapping in single-cell RNA-seq data
Jonathan A. Griffiths et al.
NATURE COMMUNICATIONS (2018)
Disruption of GPR35 Exacerbates Dextran Sulfate Sodium-Induced Colitis in Mice
Shukkur M. Farooq et al.
DIGESTIVE DISEASES AND SCIENCES (2018)
The Dynamic Changes of Gut Microbiota in Muc2 Deficient Mice
Minna Wu et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)
NAIP-NLRC4 Inflammasomes Coordinate Intestinal Epithelial Cell Expulsion with Eicosanoid and IL-18 Release via Activation of Caspase-1 and-8
Isabella Rauch et al.
IMMUNITY (2017)
Deficiency Ameliorates DSS Colitis: Relevance of Compensatory Antioxidant Mechanisms
Hassan Melhem et al.
JOURNAL OF CROHNS & COLITIS (2017)
A single-cell survey of the small intestinal epithelium
Adam L. Haber et al.
NATURE (2017)
Nlrp9b inflammasome restricts rotavirus infection in intestinal epithelial cells
Shu Zhu et al.
NATURE (2017)
Normalizing single-cell RNA sequencing data: challenges and opportunities
Catalina A. Vallejos et al.
NATURE METHODS (2017)
G protein-coupled receptor 35 contributes to mucosal repair in mice via migration of colonic epithelial cells
Takuya Tsukahara et al.
PHARMACOLOGICAL RESEARCH (2017)
Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data
Aaron T. L. Lun et al.
BIOSTATISTICS (2017)
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
Davis J. McCarthy et al.
BIOINFORMATICS (2017)
Homeostasis of the gut barrier and potential biomarkers
Jerry M. Wells et al.
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2017)
Ensembl comparative genomics resources
Javier Herrero et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
Classification of low quality cells from single-cell RNA-seq data
Tomislav Ilicic et al.
GENOME BIOLOGY (2016)
Epithelial IL-18 Equilibrium Controls Barrier Function in Colitis
Roni Nowarski et al.
CELL (2015)
Normalization of Host Intestinal Mucus Layers Requires Long-Term Microbial Colonization
Malin E. V. Johansson et al.
CELL HOST & MICROBE (2015)
Computational assignment Of cell-cycle stage from single-cell transcriptome data
Antonio Scialdone et al.
METHODS (2015)
The Molecular Signatures Database Hallmark Gene Set Collection
Arthur Liberzon et al.
CELL SYSTEMS (2015)
Cutting Edge: GPR35/CXCR8 Is the Receptor of the Mucosal Chemokine CXCL17
Jose L. Maravillas-Montero et al.
JOURNAL OF IMMUNOLOGY (2015)
Immune modulation by bacterial outer membrane vesicles
Maria Kaparakis-Liaskos et al.
NATURE REVIEWS IMMUNOLOGY (2015)
Roles and regulation of the mucus barrier in the gut
Steve Cornick et al.
TISSUE BARRIERS (2015)
Distal and proximal colon cancers differ in terms of molecular, pathological, and clinical features
E. Missiaglia et al.
ANNALS OF ONCOLOGY (2014)
Liver X receptor β activation induces pyroptosis of human and murine colon cancer cells
V. Derangere et al.
CELL DEATH AND DIFFERENTIATION (2014)
NLRP3 Inflammasome Activation Results in Hepatocyte Pyroptosis, Liver Inflammation, and Fibrosis in Mice
Alexander Wree et al.
HEPATOLOGY (2014)
A Review on Chemical-Induced Inflammatory Bowel Disease Models in Rodents
Puneet Kaur Randhawa et al.
KOREAN JOURNAL OF PHYSIOLOGY & PHARMACOLOGY (2014)
Cytokines in inflammatory bowel disease
Markus F. Neurath
NATURE REVIEWS IMMUNOLOGY (2014)
Genome-Wide Association Analysis in Primary Sclerosing Cholangitis and Ulcerative Colitis Identifies Risk Loci at GPR35 and TCF4
David Ellinghaus et al.
HEPATOLOGY (2013)
The Mucin Muc2 Limits Pathogen Burdens and Epithelial Barrier Dysfunction during Salmonella enterica Serovar Typhimurium Colitis
Maryam Zarepour et al.
INFECTION AND IMMUNITY (2013)
CX3CR1+ macrophages support IL-22 production by innate lymphoid cells during infection with Citrobacter rodentium
C. Manta et al.
MUCOSAL IMMUNOLOGY (2013)
Regulation of inflammasome signaling
Vijay A. K. Rathinam et al.
NATURE IMMUNOLOGY (2012)
Camera: a competitive gene set test accounting for inter-gene correlation
Di Wu et al.
NUCLEIC ACIDS RESEARCH (2012)
Importance and regulation of the colonic mucus barrier in a mouse model of colitis
J. Petersson et al.
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2011)
Composition and functional role of the mucus layers in the intestine
Malin E. V. Johansson et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2011)
The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions
Malin E. V. Johansson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Muc2 Protects against Lethal Infectious Colitis by Disassociating Pathogenic and Commensal Bacteria from the Colonic Mucosa
Kirk S. B. Bergstrom et al.
PLOS PATHOGENS (2010)
A scaling normalization method for differential expression analysis of RNA-seq data
Mark D. Robinson et al.
GENOME BIOLOGY (2010)
Stem Cells, Self-Renewal, and Differentiation in the Intestinal Epithelium
Laurens G. van der Flier et al.
ANNUAL REVIEW OF PHYSIOLOGY (2009)
Common variants at five new loci associated with early-onset inflammatory bowel disease
Marcin Imielinski et al.
NATURE GENETICS (2009)
Pyroptosis: host cell death and inflammation
Tessa Bergsbaken et al.
NATURE REVIEWS MICROBIOLOGY (2009)
The protein disulfide isomerase AGR2 is essential for production of intestinal mucus
Sung-Woo Park et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria
Malin E. V. Johansson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Kynurenic acid as a ligand for orphan G protein-coupled receptor GPR35
Jinghong Wang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)