Related references
Note: Only part of the references are listed.Reference genes for the study of herbicide stress responses in Leptochloa chinensis (L.) Nees and estimation of ACCase expression in cyhalofop-butyl resistant populations
Yi Zhang et al.
PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY (2021)
An ABCC-type transporter endowing glyphosate resistance in plants
Lang Pan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Whole transcriptome analysis resulted in the identification of Chinese sprangletop (Leptochloa chinensis) genes involved in cyhalofop-butyl tolerance
Ke Chen et al.
BMC GENOMICS (2021)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Confirmation and characterization of cyhalofop-butyl-resistant Chinese sprangletop (Leptochloa chinensis) populations from China
Peng Yajun et al.
WEED SCIENCE (2020)
Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff
Robert VanBuren et al.
NATURE COMMUNICATIONS (2020)
Mechanisms of evolved herbicide resistance
Todd A. Gaines et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2020)
Identification of a cytochrome P450 hydroxylase,CYP81E22, as a causative gene for the high sensitivity of soybean to herbicide bentazon
Shin Kato et al.
THEORETICAL AND APPLIED GENETICS (2020)
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
T. Rhyker Ranallo-Benavidez et al.
NATURE COMMUNICATIONS (2020)
The Genomes of the Allohexaploid Echinochloa crus-galli and Its Progenitors Provide Insights into Polyploidization-Driven Adaptation
Chu-Yu Ye et al.
MOLECULAR PLANT (2020)
Non-destructive phenotyping for early seedling vigor in direct-seeded rice
Annamalai Anandan et al.
PLANT METHODS (2020)
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
Arang Rhie et al.
GENOME BIOLOGY (2020)
Development of a goosegrass (Eleusine indica) draft genome and application to weed science research
Hui Zhang et al.
PEST MANAGEMENT SCIENCE (2019)
PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
Sean P. Gordon et al.
BMC GENOMICS (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Fenoxaprop-P-ethyl resistance conferred by cytochrome P450s and target site mutation in Alopecurus japonicus
Guoqi Chen et al.
PEST MANAGEMENT SCIENCE (2018)
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Michael J. Roach et al.
BMC BIOINFORMATICS (2018)
Pilot satellitome analysis of the model plant, Physcomitrella patens, revealed a transcribed and high-copy IGS related tandem repeat
Ilya Kirov et al.
COMPARATIVE CYTOGENETICS (2018)
A chromosome-scale assembly of the model desiccation tolerant grass Oropetium thomaeum
Robert VanBuren et al.
PLANT DIRECT (2018)
LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes
Rosa Maria Cossu et al.
GENOME BIOLOGY AND EVOLUTION (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes
Honghe Sun et al.
MOLECULAR PLANT (2017)
Reconstructing the genome of the most recent common ancestor of flowering plants
Florent Murat et al.
NATURE GENETICS (2017)
Mechanism of resistance to cyhalofop-butyl in Chinese sprangletop (Leptochloa chinensis (L.) Nees)
Jiaxing Yu et al.
PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY (2017)
Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants
Meixia Zhao et al.
PLANT CELL (2017)
Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed
Longbiao Guo et al.
NATURE COMMUNICATIONS (2017)
A global analysis of alternative tillage and crop establishment practices for economically and environmentally efficient rice production
Debashis Chakraborty et al.
SCIENTIFIC REPORTS (2017)
Sequencing and comparative analyses of the genomes of zoysiagrasses
Hidenori Tanaka et al.
DNA RESEARCH (2016)
Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss
Pavel Avdeyev et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2016)
Using intron position conservation for homology-based gene prediction
Jens Keilwagen et al.
NUCLEIC ACIDS RESEARCH (2016)
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand et al.
CELL SYSTEMS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum
Robert VanBuren et al.
NATURE (2015)
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
Tianzhen Zhang et al.
NATURE BIOTECHNOLOGY (2015)
Plant genome size variation: bloating and purging DNA
Todd P. Michael
BRIEFINGS IN FUNCTIONAL GENOMICS (2014)
Two Evolutionarily Distinct Classes of Paleopolyploidy
Olivier Garsmeur et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
Alexandre Lomsadze et al.
NUCLEIC ACIDS RESEARCH (2014)
Cytochrome P450 genes induced by bispyribac- sodium treatment in amultiple- herbicide- resistant biotype of Echinochloa phyllopogon
Satoshi Iwakami et al.
PEST MANAGEMENT SCIENCE (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
Margaret R. Woodhouse et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Deciphering the evolution of herbicide resistance in weeds
Christophe Delye et al.
TRENDS IN GENETICS (2013)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Altered Patterns of Fractionation and Exon Deletions in Brassica rapa Support a Two-Step Model of Paleohexaploidy
Haibao Tang et al.
GENETICS (2012)
Reference genome sequence of the model plant Setaria
Jeffrey L. Bennetzen et al.
NATURE BIOTECHNOLOGY (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Inference of human population history from individual whole-genome sequences
Heng Li et al.
NATURE (2011)
Establishing a time-scale for plant evolution
John T. Clarke et al.
NEW PHYTOLOGIST (2011)
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
James C. Schnable et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes
Christian Roedelsperger et al.
PLOS ONE (2010)
Food Security: The Challenge of Feeding 9 Billion People
H. Charles J. Godfray et al.
SCIENCE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
Brian C. Thomas et al.
GENOME RESEARCH (2006)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
CAFE: a computational tool for the study of gene family evolution
T De Bie et al.
BIOINFORMATICS (2006)
Crop losses to pests
E. -C. Oerke
JOURNAL OF AGRICULTURAL SCIENCE (2006)
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Purification and cloning of an esterase from the weed black-grass (Alopecurus myosuroides), which bioactivates aryloxyphenoxypropionate herbicides
I Cummins et al.
PLANT JOURNAL (2004)
TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
WH Majoros et al.
BIOINFORMATICS (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
Share Paper
