4.5 Review

Omics: a tool for resilient rice genetic improvement strategies

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Discovery of Genome-Wide DNA Polymorphisms and Resistance-Relative Genes in Chaling Wild Rice (Oryza rufipogonGriff.) by Whole-Genome Sequencing

Dandan Wu et al.

Summary: Chaling common wild rice possesses abundant genetic diversity and elite genes, as revealed by next-generation sequencing technology. The study found high-density variations in certain chromosomes and identified numerous non-synonymous SNPs and InDels in coding regions, with potential resistance genes showing high polymorphism rates. This research lays a foundation for future basic research and marker-assisted breeding for rice resistance.

PLANT MOLECULAR BIOLOGY REPORTER (2021)

Review Plant Sciences

CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture

Kunling Chen et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 70 (2019)

Article Multidisciplinary Sciences

Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate

Donghai Mao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biotechnology & Applied Microbiology

In vitro induction of auto-allotetraploid in a newly developed wild rice line from Oryza alta Swallen

Liusheng Zhang et al.

PLANT CELL TISSUE AND ORGAN CULTURE (2019)

Article Mathematical & Computational Biology

RiceRelativesGD: a genomic database of rice relatives for rice research

Lingfeng Mao et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2019)

Article Biochemistry & Molecular Biology

TGW3, a Major QTL that Negatively Modulates Grain Length and Weight in Rice

Jie-Zheng Ying et al.

MOLECULAR PLANT (2018)

Article Plant Sciences

Improvement of Salt Tolerance Using Wild Rice Genes

Ruidang Quan et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Biochemistry & Molecular Biology

Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice

Hongru Wang et al.

GENOME RESEARCH (2017)

Article Multidisciplinary Sciences

.A natural tandem array alleviates epigenetic repression of IPA1 and leads to superior yielding rice

Lin Zhang et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

Sequencing and de novo assembly of a near complete indica rice genome

Huilong Du et al.

NATURE COMMUNICATIONS (2017)

Article Genetics & Heredity

OsSPL13 controls grain size in cultivated rice

Lizhen Si et al.

NATURE GENETICS (2016)

Article Multidisciplinary Sciences

Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation

Yan Zhao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Plant Sciences

Analytical and Decision Support Tools for Genomics-Assisted Breeding

Rajeev K. Varshney et al.

TRENDS IN PLANT SCIENCE (2016)

Article Plant Sciences

Gramene database: Navigating plant comparative genomics resources

Parul Gupta et al.

CURRENT PLANT BIOLOGY (2016)

Article Biochemistry & Molecular Biology

COLD1 Confers Chilling Tolerance in Rice

Yun Ma et al.

Article Biochemistry & Molecular Biology

A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice

Jiang Hu et al.

MOLECULAR PLANT (2015)

Article Biotechnology & Applied Microbiology

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

Zhengkui Zhou et al.

NATURE BIOTECHNOLOGY (2015)

Review Biochemical Research Methods

Plant genome sequencing - applications for crop improvement

Marie E. Bolger et al.

CURRENT OPINION IN BIOTECHNOLOGY (2014)

Editorial Material Multidisciplinary Sciences

A GOOD GRAIN

Emily Elert

NATURE (2014)

Review Plant Sciences

Recent progress on molecular breeding of rice in China

Yuchun Rao et al.

PLANT CELL REPORTS (2014)

Article Multidisciplinary Sciences

STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus

Qi Wang et al.

NATURE COMMUNICATIONS (2014)

Review Biochemistry & Molecular Biology

Blast resistance in rice: a review of conventional breeding to molecular approaches

G. Miah et al.

MOLECULAR BIOLOGY REPORTS (2013)

Article Multidisciplinary Sciences

Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression

Shuyu Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

Molecular Evolution of the TAC1 Gene from Rice (Oryza sativa L.)

Jiahuan Jiang et al.

JOURNAL OF GENETICS AND GENOMICS (2012)

Article Genetics & Heredity

Control of grain size, shape and quality by OsSPL16 in rice

Shaokui Wang et al.

NATURE GENETICS (2012)

Article Biotechnology & Applied Microbiology

Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1

Yingnan Chen et al.

PLANT BIOTECHNOLOGY JOURNAL (2012)

Editorial Material Biology

GigaDB: announcing the GigaScience database

Tam P. Sneddon et al.

GIGASCIENCE (2012)

Article Biochemistry & Molecular Biology

A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae

Jie Chen et al.

JOURNAL OF GENETICS AND GENOMICS (2011)

Article Biochemistry & Molecular Biology

Transcriptional Characteristics of Xa21-mediated Defense Responses in Rice

Qiang Gan et al.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2011)

Review Plant Sciences

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

Keiichi Mochida et al.

PLANT AND CELL PHYSIOLOGY (2011)

Article Biotechnology & Applied Microbiology

OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth

Weijiang Luan et al.

PLANT BIOTECHNOLOGY JOURNAL (2011)

Article Biochemistry & Molecular Biology

LAX PANICLE2 of Rice Encodes a Novel Nuclear Protein and Regulates the Formation of Axillary Meristems

Hiroaki Tabuchi et al.

PLANT CELL (2011)

Review Plant Sciences

Genetic and Molecular Bases of Rice Yield

Yongzhong Xing et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 61 (2010)

Review Agronomy

Oryzabase: an integrated information resource for rice science

Yukiko Yamazaki et al.

BREEDING SCIENCE (2010)

Article Genetics & Heredity

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

Yongqing Jiao et al.

NATURE GENETICS (2010)

Article Genetics & Heredity

Genome-wide association studies of 14 agronomic traits in rice landraces

Xuehui Huang et al.

NATURE GENETICS (2010)

Article Multidisciplinary Sciences

Rice yields in tropical/subtropical Asia exhibit large but opposing sensitivities to minimum and maximum temperatures

Jarrod R. Welch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Cell Biology

OsHAL3 mediates a new pathway in the light-regulated growth of rice

Shi-Yong Sun et al.

NATURE CELL BIOLOGY (2009)

Article Genetics & Heredity

Natural variation at the DEP1 locus enhances grain yield in rice

Xianzhong Huang et al.

NATURE GENETICS (2009)

Article Multidisciplinary Sciences

A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance

Xin Hou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Agronomy

Genetic Control of Germination Ability under Cold Stress in Rice

Wang Zhou-fei et al.

RICE SCIENCE (2009)

Article Biochemistry & Molecular Biology

Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice

Honghong Hu et al.

PLANT MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library

Pierre Larmande et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Plant Sciences

Origin of seed shattering in rice (Oryza sativa L.)

Zhongwei Lin et al.

PLANTA (2007)

Article Biotechnology & Applied Microbiology

An expression atlas of rice mRNAs and small RNAs

Kan Nobuta et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

Genetic analysis and fine mapping of a rice brown planthopper (Nilaparvata lugens Stal) resistance gene bph19(t)

JW Chen et al.

MOLECULAR GENETICS AND GENOMICS (2006)

Article Genetics & Heredity

A rice quantitative trait locus for salt tolerance encodes a sodium transporter

ZH Ren et al.

NATURE GENETICS (2005)

Article Plant Sciences

Plant genome resources at the National Center for Biotechnology Information

DL Wheeler et al.

PLANT PHYSIOLOGY (2005)

Review Plant Sciences

To clone or not to clone plant QTLs: present and future challenges

S Salvi et al.

TRENDS IN PLANT SCIENCE (2005)

Article Biology

Map-based cloning of the ALK gene, which controls the gelatinization temperature of rice

ZY Gao et al.

SCIENCE IN CHINA SERIES C-LIFE SCIENCES (2003)

Article Multidisciplinary Sciences

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

S Kikuchi et al.

SCIENCE (2003)

Article Multidisciplinary Sciences

Control of tillering in rice

XY Li et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

MOsDB: an integrated information resource for rice genomics

WM Karlowski et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Multidisciplinary Sciences

A draft sequence of the rice genome (Oryza sativa L. ssp japonica)

SA Goff et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

A draft sequence of the rice genome (Oryza sativa L. ssp indica)

J Yu et al.

SCIENCE (2002)

Review Plant Sciences

International Rice Genome Sequencing Project: the effort to completely sequence the rice genome

T Sasaki et al.

CURRENT OPINION IN PLANT BIOLOGY (2000)