Related references
Note: Only part of the references are listed.Temporal modulation of the NF-κB ReIA network in response to different types of DNA damage
Amy E. Campbell et al.
BIOCHEMICAL JOURNAL (2021)
Mechanism of conditional partner selectivity in MITF/TFE family transcription factors with a conserved coiled coil stammer motif
Vivian Pogenberg et al.
NUCLEIC ACIDS RESEARCH (2020)
The functional landscape of the human phosphoproteome
David Ochoa et al.
NATURE BIOTECHNOLOGY (2020)
SciPy 1.0: fundamental algorithms for scientific computing in Python
Pauli Virtanen et al.
NATURE METHODS (2020)
Use of the Polo-like kinase 4 (PLK4) inhibitor centrinone to investigate intracellular signalling networks using SILAC-based phosphoproteomics
Dominic P. Byrne et al.
BIOCHEMICAL JOURNAL (2020)
A New Workflow for the Analysis of Phosphosite Occupancy in Paired Samples by Integration of Proteomics and Phosphoproteomics Data Sets
Yan Wang et al.
JOURNAL OF PROTEOME RESEARCH (2020)
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project
Michael R. Hoopmann et al.
JOURNAL OF PROTEOME RESEARCH (2020)
Phosphorylation of a serine/proline-rich motif in oxysterol binding protein-related protein 4L (ORP4L) regulates cholesterol and vimentin binding
Antonietta Pietrangelo et al.
PLOS ONE (2019)
PTMProphet: Fast and Accurate Mass Modification the Trans-Proteomic Pipeline
David D. Shteynberg et al.
JOURNAL OF PROTEOME RESEARCH (2019)
Conserved phosphorylation hotspots in eukaryotic protein domain families
Marta J. Strumillo et al.
NATURE COMMUNICATIONS (2019)
Large-scale Discovery of Substrates of the Human Kinome
Naoyuki Sugiyama et al.
SCIENTIFIC REPORTS (2019)
Strong anion exchange-mediated phosphoproteomics reveals extensive human non-canonical phosphorylation
Gemma Hardman et al.
EMBO JOURNAL (2019)
The Crosstalk between Acetylation and Phosphorylation: Emerging New Roles for HDAC Inhibitors in the Heart
Justine Habibian et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
UniProt: a worldwide hub of protein knowledge
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2019)
dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications
Kai-Yao Huang et al.
NUCLEIC ACIDS RESEARCH (2019)
Evaluation of Parameters for Confident Phosphorylation Site Localization Using an Orbitrap Fusion Tribrid Mass Spectrometer
Samantha Ferries et al.
JOURNAL OF PROTEOME RESEARCH (2017)
Elucidating crosstalk mechanisms between phosphorylation and O-GlcNAcylation
Aneika C. Leney et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
g2pDB: A Database Mapping Protein Post-Translational Modifications to Genomic Coordinates
Sarah Keegan et al.
JOURNAL OF PROTEOME RESEARCH (2016)
Evolution of protein phosphorylation across 18 fungal species
Romain A. Studer et al.
SCIENCE (2016)
Conserved proline-directed phosphorylation regulates SR protein conformation and splicing function
Malik M. Keshwani et al.
BIOCHEMICAL JOURNAL (2015)
Computational phosphoproteomics: From identification to localization
Dave C. H. Lee et al.
PROTEOMICS (2015)
An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas
Piero Giansanti et al.
CELL REPORTS (2015)
PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
Peter V. Hornbeck et al.
NUCLEIC ACIDS RESEARCH (2015)
PhosFox: a bioinformatics tool for peptide-level processing of LC-MS/MS-based phosphoproteomic data
Sandra Soderholm et al.
PROTEOME SCIENCE (2014)
Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling
Kirti Sharma et al.
CELL REPORTS (2014)
Systematic Functional Prioritization of Protein Posttranslational Modifications
Pedro Beltrao et al.
CELL (2012)
Rapid Determination of Multiple Linear Kinase Substrate Motifs by Mass Spectrometry
Arminja N. Kettenbach et al.
CHEMISTRY & BIOLOGY (2012)
Universal and Confident Phosphorylation Site Localization Using phosphoRS
Thomas Taus et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
Juergen Cox et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Phospho.ELM: a database of phosphorylation sites-update 2011
Holger Dinkel et al.
NUCLEIC ACIDS RESEARCH (2011)
PHOSIDA 2011: the posttranslational modification database
Florian Gnad et al.
NUCLEIC ACIDS RESEARCH (2011)
Prediction of 492 human protein kinase substrate specificities
Javad Safaei et al.
PROTEOME SCIENCE (2011)
Phosphorylated and Nonphosphorylated Serine and Threonine Residues Evolve at Different Rates in Mammals
Sean Chun-Chang Chen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
A guided tour of the Trans-Proteomic Pipeline
Eric W. Deutsch et al.
PROTEOMICS (2010)
Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
Jesper V. Olsen et al.
SCIENCE SIGNALING (2010)
qvality: non-parametric estimation of q-values and posterior error probabilities
Lukas Kall et al.
BIOINFORMATICS (2009)
Weak functional constraints on phosphoproteomes
Christian R. Landry et al.
TRENDS IN GENETICS (2009)
Comparative conservation analysis of the human mitotic phosphoproteome
Rainer Malik et al.
BIOINFORMATICS (2008)
Non-functional phosphorylations?
Gustav E. Lienhard
TRENDS IN BIOCHEMICAL SCIENCES (2008)
Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes
Jos Boekhorst et al.
GENOME BIOLOGY (2008)
Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
Klarisa Rikova et al.
CELL (2007)
Coiled coil structures and transcription:: an analysis of the S-cerevisiae coilome
Kellie E. Barbara et al.
MOLECULAR GENETICS AND GENOMICS (2007)
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Joshua E. Elias et al.
NATURE METHODS (2007)
A curated compendium of phosphorylation motifs
Ramars Amanchy et al.
NATURE BIOTECHNOLOGY (2007)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
Jesper V. Olsen et al.
CELL (2006)
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
Sean A. Beausoleil et al.
NATURE BIOTECHNOLOGY (2006)
Phosphoproteome analysis of the human mitotic spindle
M Nousiainen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
The PeptideAtlas project
Frank Desiere et al.
NUCLEIC ACIDS RESEARCH (2006)
Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC)
R Amanchy et al.
JOURNAL OF PROTEOME RESEARCH (2005)
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
J Rush et al.
NATURE BIOTECHNOLOGY (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Probing protein-tyrosine phosphatase substrate specificity using a phosphotyrosine-containing phage library
S Wälchli et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
A rapid method for determining protein kinase phosphorylation specificity
JE Hutti et al.
NATURE METHODS (2004)
The role of protein phosphorylation in human health and disease - Delivered on June 30th 2001 at the FEBS Meeting in Lisbon
P Cohen
EUROPEAN JOURNAL OF BIOCHEMISTRY (2001)