4.5 Article

Insights into Mus musculus Population Structure across Eurasia Revealed by Whole-Genome Analysis

Related references

Note: Only part of the references are listed.
Article Ecology

House mouseMus musculusdispersal in East Eurasia inferred from 98 newly determined complete mitochondrial genome sequences

Yue Li et al.

Summary: The study reveals the dispersal routes of the Eurasian house mouse over the past 2000-18,000 years and the three dispersal events of CAS, providing a solid framework for the spatiotemporal movement of human-associated organisms in Holocene Eastern Eurasia.

HEREDITY (2021)

Article Biochemical Research Methods

GenMap: ultra-fast computation of genome mappability

Christopher Pockrandt et al.

BIOINFORMATICS (2020)

Article Multidisciplinary Sciences

Accurate, scalable and integrative haplotype estimation

Olivier Delaneau et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

The genomic ancestry, landscape genetics and invasion history of introduced mice in New Zealand

Andrew J. Veale et al.

ROYAL SOCIETY OPEN SCIENCE (2018)

Article Biochemistry & Molecular Biology

Gene regulation underlies environmental adaptation in house mice

Katya L. Mack et al.

GENOME RESEARCH (2018)

Article Genetics & Heredity

The genomic basis of environmental adaptation in house mice

Megan Phifer-Rixey et al.

PLOS GENETICS (2018)

Article Multidisciplinary Sciences

Differences between germline and somatic mutation rates in humans and mice

Brandon Milholland et al.

NATURE COMMUNICATIONS (2017)

Article Biochemical Research Methods

MultiQC: summarize analysis results for multiple tools and samples in a single report

Philip Ewels et al.

BIOINFORMATICS (2016)

Article Multidisciplinary Sciences

A genomic history of Aboriginal Australia

Anna-Sapfo Malaspinas et al.

NATURE (2016)

Article Multidisciplinary Sciences

Interspecific introgressive origin of genomic diversity in the house mouse

Kevin J. Liu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Genetics & Heredity

Contrasting X-Linked and Autosomal Diversity across 14 Human Populations

Leonardo Arbiza et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2014)

Article Biochemical Research Methods

SAMBLASTER: fast duplicate marking and structural variant read extraction

Gregory G. Faust et al.

BIOINFORMATICS (2014)

Article Genetics & Heredity

Genome-Wide Patterns of Differentiation Among House Mouse Subspecies

Megan Phifer-Rixey et al.

GENETICS (2014)

Article Genetics & Heredity

Inferring human population size and separation history from multiple genome sequences

Stephan Schiffels et al.

NATURE GENETICS (2014)

Article Biochemistry & Molecular Biology

The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains

Toyoyuki Takada et al.

GENOME RESEARCH (2013)

Article Multidisciplinary Sciences

Great ape genetic diversity and population history

Javier Prado-Martinez et al.

NATURE (2013)

Review Genetics & Heredity

Genetic tracking of mice and other bioproxies to infer human history

Eleanor P. Jones et al.

TRENDS IN GENETICS (2013)

Article Evolutionary Biology

The south-eastern house mouse Mus musculus castaneus (Rodentia: Muridae) is a polytypic subspecies

Hassan Rajabi-Maham et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2012)

Article Genetics & Heredity

Ancient Admixture in Human History

Nick Patterson et al.

GENETICS (2012)

Article Biochemistry & Molecular Biology

Comparative RNA sequencing reveals substantial genetic variation in endangered primates

George H. Perry et al.

GENOME RESEARCH (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Zoology

The expansion of the house mouse into north-western Europe

E. P. Jones et al.

JOURNAL OF ZOOLOGY (2011)

Article Biochemistry & Molecular Biology

Isolation and gene flow: inferring the speciation history of European house mice

Ludovic Duvaux et al.

MOLECULAR ECOLOGY (2011)

Article Multidisciplinary Sciences

Inference of human population history from individual whole-genome sequences

Heng Li et al.

NATURE (2011)

Article Multidisciplinary Sciences

Mouse genomic variation and its effect on phenotypes and gene regulation

Thomas M. Keane et al.

NATURE (2011)

Article Genetics & Heredity

Subspecific origin and haplotype diversity in the laboratory mouse

Hyuna Yang et al.

NATURE GENETICS (2011)

Article Multidisciplinary Sciences

Of Mice and 'Convicts': Origin of the Australian House Mouse, Mus musculus

Sofia I. Gabriel et al.

PLOS ONE (2011)

Article Biology

Genetic differentiation of the house mouse around the Mediterranean basin: matrilineal footprints of early and late colonization

Francois Bonhomme et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)

Article Biochemical Research Methods

Robust relationship inference in genome-wide association studies

Ani Manichaikul et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Review Genetics & Heredity

Hybrid incompatibility genes: remnants of a genomic battlefield?

Norman A. Johnson

TRENDS IN GENETICS (2010)

Article Genetics & Heredity

Evidence for Pervasive Adaptive Protein Evolution in Wild Mice

Daniel L. Halligan et al.

PLOS GENETICS (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Fast model-based estimation of ancestry in unrelated individuals

David H. Alexander et al.

GENOME RESEARCH (2009)

Article Genetics & Heredity

Fine-Scale Phylogenetic Discordance across the House Mouse Genome

Michael A. White et al.

PLOS GENETICS (2009)

Article Biochemistry & Molecular Biology

Mosaic genealogy of the Mus musculus genome revealed by 21 nuclear genes from its three subspecies

Yu-Hua Liu et al.

GENES & GENETIC SYSTEMS (2008)

Article Biochemistry & Molecular Biology

Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes

Armando Geraldes et al.

MOLECULAR ECOLOGY (2008)

Article Biochemistry & Molecular Biology

Genome-wide patterns of gene flow across a house mouse hybrid zone

Katherine C. Teeter et al.

GENOME RESEARCH (2008)

Article Genetics & Heredity

Nucleotide variation in wild and inbred mice

Tovah Salcedo et al.

GENETICS (2007)

Article Genetics & Heredity

PLINK: A tool set for whole-genome association and population-based linkage analyses

Shaun Purcell et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2007)

Article Genetics & Heredity

On the subspecific origin of the laboratory mouse

Hyuna Yang et al.

NATURE GENETICS (2007)

Article Multidisciplinary Sciences

A sequence-based variation map of 8.27 million SNPs in inbred mouse strains

Kelly A. Frazer et al.

NATURE (2007)

Article Genetics & Heredity

Reduced X-linked diversity in derived populations of house mice

John F. Baines et al.

GENETICS (2007)

Article Genetics & Heredity

Population structure and eigenanalysis

Nick Patterson et al.

PLOS GENETICS (2006)

Article Evolutionary Biology

Inferences of selection and migration in the Danish house mouse hybrid zone

N Raufaste et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2005)

Article Evolutionary Biology

Testing for selection on the androgen-binding protein in the Danish mouse hybrid zone

B Dod et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2005)

Article Evolutionary Biology

Mitochondrial DNA in the hybrid zone between Mus musculus musculus and Mus musculus domesticus:: a comparison of two transects

E Bozíková et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2005)

Article Biochemical Research Methods

APE: Analyses of Phylogenetics and Evolution in R language

E Paradis et al.

BIOINFORMATICS (2004)

Review Biochemistry & Molecular Biology

Temporal, spatial, and ecological modes of evolution of Eurasian Mus based on mitochondrial and nuclear gene sequences

H Suzuki et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2004)

Review Multidisciplinary Sciences

Initial sequencing and comparative analysis of the mouse genome

RH Waterston et al.

NATURE (2002)