4.6 Review

Forecasting the number of species of asexually reproducing fungi (Ascomycota and Basidiomycota)

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Names of Phytopathogenic Fungi: A Practical Guide

Pedro W. Crous et al.

Summary: Using the correct name for phytopathogenic fungi and oomycetes is crucial for communicating knowledge and simplifying the process of finding the correct name, with DNA technologies playing a key role in connecting different morphs of the same species. The move towards a more natural classification system and the introduction of molecular systematics are driving forces for the reclassification of fungi, including pathogens. This article outlines steps to aid in determining the correct name and provides a list of accurate names for common genera and species of phytopathogenic fungi.

PHYTOPATHOLOGY (2021)

Article Biodiversity Conservation

Lasiodiplodia syzygii sp. nov. (Botryosphaeriaceae) causing post-harvest water-soaked brown lesions on Syzygium samarangense in Chiang Rai, Thailand

Chao-Rong Meng et al.

Summary: The exotic fruit tree Wax apple in Chiang Rai Province, Thailand has been found to be affected by a newly-introduced pathogenic fungus, identified as L. syzygii sp. nov., causing post-harvest water-soaked brown lesions. Morphological and molecular analyses confirmed the distinctiveness of this newly-introduced species.

BIODIVERSITY DATA JOURNAL (2021)

Article Mycology

In honor of John Bissett: authoritative guidelines on molecular identification of Trichoderma

Feng Cai et al.

Summary: Modern taxonomy is moving towards establishing global authoritative lists of species, but in fungi, species delimitation is often subjective, which complicates accurate identification. The genus Trichoderma offers insights into the challenges of species identification and highlights the need for cooperation among researchers in handling upcoming genomic data.

FUNGAL DIVERSITY (2021)

Article Plant Sciences

Yunnan-Guizhou Plateau: a mycological hotspot

Nalin N. Wijayawardene et al.

Summary: Guizhou and Yunnan Provinces in Southwestern China are well-known for their biodiversity. This study introduces two new species and six new records, providing full descriptions, color photographs, and phylogenetic trees to indicate the placements of the new species.

PHYTOTAXA (2021)

Article Biodiversity Conservation

Allophoma species (Pleosporales: Didymellaceae) associated with Thunbergia grandiflora in Guangxi Province, China

Jun Yuan et al.

Summary: A new species of Allophoma, named A. thunbergiae, was discovered from the leaves of Thunbergia grandiflora in China, showing close affinity to A. minor. This marks the first report of Allophoma taxa from this specific host plant.

BIODIVERSITY DATA JOURNAL (2021)

Review Microbiology

Fungal taxonomy and sequence-based nomenclature

Robert Lucking et al.

Summary: Identifying and naming microfungi, especially plant, animal, and human pathogens, remains a challenge. Molecular identification is increasingly used, and environmental metabarcoding is generating a vast amount of sequence data to document global fungal diversity. Solutions for naming taxa known only from sequences are proposed based on bacterial taxonomy methods.

NATURE MICROBIOLOGY (2021)

Review Mycology

What are fungal species and how to delineate them?

K. W. Thilini Chethana et al.

Summary: Defining and recognizing fungal species has long been a controversial issue, with over 30 species criteria proposed since Darwin's origin of species. Phylogenetic analyses based on multiple loci are widely used, but can mask discordances among fungal groups. In order to delimit fungal species, phylogenetic and phenotypic coherence, as well as the timing of events leading to speciation, need to be considered.

FUNGAL DIVERSITY (2021)

Review Mycology

Integrative approaches for species delimitation in Ascomycota

Sajeewa S. N. Maharachchikumbura et al.

Summary: Disturbances caused by human activities result in biodiversity loss and call for more effective ways to discover and delimit species. The paper reviews the main approaches used to delimit species in the phylum Ascomycota, highlighting the advantages and disadvantages of each species concept. The advancement in phylogenetic methods has increased the rate of species discovery, but challenges such as gene tree heterogeneity still hinder species delimitation in low-rank phylogenies.

FUNGAL DIVERSITY (2021)

Review Mycology

The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks

Teun Boekhout et al.

Summary: The review discusses the evolving species concepts used to understand yeast diversity, including the phenotypic and biological species concepts, as well as the use of DNA similarity and sequencing technology in species concepts. It recommends the use of complete genomes to enhance our understanding of species and genetic dynamics, and notes the common occurrence of hybridization in fungal lineages containing yeasts.

FUNGAL DIVERSITY (2021)

Review Mycology

Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics

Robert Luecking et al.

Summary: Lichens are symbiotic associations between fungi, algae/cyanobacteria, and specific bacteria. The naming conventions differentiate between the scientific, Latinized name referring to the primary mycobiont and the vernacular name for the whole lichen. Taxonomic recognition in lichen-forming fungi follows similar principles as other fungi, requiring empirical evidence for species delimitation.

FUNGAL DIVERSITY (2021)

Review Mycology

What is a species in fungal plant pathogens?

Ruvishika S. Jayawardena et al.

Summary: Scientific names are crucial for communicating knowledge about fungi and fungus-like organisms, especially in the field of plant pathology. While traditional identification of species was based on morphology, there is now a shift towards molecular phylogenetic reconstructions for more accurate species delimitation.

FUNGAL DIVERSITY (2021)

Review Microbiology

Current Insight into Culture-Dependent and Culture-Independent Methods in Discovering Ascomycetous Taxa

Nalin N. Wijayawardene et al.

Summary: Culture techniques are crucial for fungal taxonomy, but many species are unable to sporulate in nature or be cultured. Recent studies have revealed unculturable taxa, known as dark taxa, through culture-independent methods. Environmental sequencing plays a vital role in discovering missing species, although Sanger sequencing remains the main approach.

JOURNAL OF FUNGI (2021)

Article Mycology

Evaluating species in Botryosphaeriales

W. Zhang et al.

Summary: This study conducted a phylogenetic analysis on 230 isolates within the Botryosphaeriales order, resulting in the reclassification of 58 species and the description of eight new species. The study also demonstrated the reliability of tef1, tub2, and rpb2 genes as markers, and highlighted the importance of reassessing older collections in culture collections using modern taxonomic frameworks and methods.

PERSOONIA (2021)

Article Mycology

Life in leaf litter: Fungal community succession during decomposition

D. S. Tennakoon et al.

Summary: Leaf litter decomposition is crucial for forest ecosystem nutrient cycling, with fungal communities playing a key role in breakdown and recycling. Understanding fungal succession through high throughput methods and combining morphological and molecular data is essential for studying species diversity and community dynamics in fungal succession experiments. There are opportunities for further breakthroughs in this area, as current approaches show potential but have not been widely applied.

MYCOSPHERE (2021)

Article Limnology

Fungal richness does not buffer the effects of streams salinization on litter decomposition

Janine Pereira da Silva et al.

Summary: The study found that high levels of salinization inhibit the decomposition of detritus in streams, with the richness of aquatic hyphomycetes unable to fully mitigate this negative impact. Functional redundancy was observed among fungal species under high salt stress conditions, ensuring stream functioning at extreme salinity levels.

ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY (2021)

Article Mycology

Fusarium: more than a node or a foot-shaped basal cell

P. W. Crous et al.

Summary: The paragraph lists multiple research institutions from around the world, covering various research fields such as microbiology, agriculture, plant protection, and food science.

STUDIES IN MYCOLOGY (2021)

Article Mycology

Revisiting Metarhizium and the description of new species from Thailand

S. Mongkolsamrit et al.

STUDIES IN MYCOLOGY (2020)

Article Mycology

The phoma-like dilemma

L. W. Hou et al.

STUDIES IN MYCOLOGY (2020)

Article Mycology

Three new Diaporthe species from Shaanxi Province, China

Qin Yang et al.

MycoKeys (2020)

Review Biotechnology & Applied Microbiology

Hybridization and the origin of new yeast lineages

Toni Gabaldon

FEMS YEAST RESEARCH (2020)

Article Mycology

Fungal pathogens occurring on Orthopterida in Thailand

D. Thanakitpipattana et al.

PERSOONIA (2020)

Article Mycology

The numbers of fungi: is the descriptive curve flattening?

Kevin D. Hyde et al.

FUNGAL DIVERSITY (2020)

Article Mycology

Cytospora (Diaporthales) in China

X. L. Fan et al.

PERSOONIA (2020)

Article Mycology

Outline of Fungi and fungus-like taxa

N. N. Wijayawardene et al.

MYCOSPHERE (2020)

Article Mycology

Taxonomy and phylogeny of hyaline-spored coelomycetes

Wen-Jing Li et al.

FUNGAL DIVERSITY (2020)

Article Mycology

Refined families of Sordariomycetes

K. D. Hyde et al.

MYCOSPHERE (2020)

Editorial Material Biochemistry & Molecular Biology

Marine fungi

Amy S. Gladfelter et al.

CURRENT BIOLOGY (2019)

Article Microbiology

A Salinity Threshold Separating Fungal Communities in the Baltic Sea

Keilor Rojas-Jimenez et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Mycology

An online resource for marine fungi

E. B. Gareth Jones et al.

FUNGAL DIVERSITY (2019)

Article Microbiology

Metschnikowia baotianmanensis f.a., sp. nov., a new yeast species isolated from the gut of the rhinoceros beetle Allomyrina dichotoma

Chun-Yue Chai et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)

Article Genetics & Heredity

Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales

Masako Takashima et al.

FUNGAL GENETICS AND BIOLOGY (2019)

Article Mycology

Foliar pathogens of eucalypts

P. W. Crous et al.

STUDIES IN MYCOLOGY (2019)

Article Mycology

Genera of phytopathogenic fungi: GOPHY 3

Y. Marin-Felix et al.

STUDIES IN MYCOLOGY (2019)

Review Genetics & Heredity

Fungal species boundaries in the genomics era

Daniel R. Matute et al.

FUNGAL GENETICS AND BIOLOGY (2019)

Article Microbiology

Mangrove-Associated Fungal Communities Are Differentiated by Geographic Location and Host Structure

Nicole Li Ying Lee et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Biochemistry & Molecular Biology

Birth of an order: Comprehensive molecular phylogenetic study excludes Herpomyces (Fungi, Laboulbeniomycetes) from Laboulbeniales

Danny Haelewaters et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Review Mycology

Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi

Bing Wu et al.

MYCOLOGY-AN INTERNATIONAL JOURNAL ON FUNGAL BIOLOGY (2019)

Article Microbiology

Four new species of Metschnikowia and the transfer of seven Candida species to Metschnikowia and Clavispora as new combinations

Cletus P. Kurtzman et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2018)

Article Mycology

Can we use environmental DNA as holotypes?

Sinang Hongsanan et al.

FUNGAL DIVERSITY (2018)

Article Mycology

Multi-locus phylogeny and taxonomy of Exserohilum

M. Hernandez-Restrepo et al.

PERSOONIA (2018)

Article Biochemistry & Molecular Biology

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

Xing-Xing Shen et al.

Review Infectious Diseases

Hybrids and hybridization in the Cryptococcus neoformans and Cryptococcus gattii species complexes

Himeshi Samarasinghe et al.

INFECTION GENETICS AND EVOLUTION (2018)

Article Mycology

Fungal Planet description sheets: 785-867

P. W. Crous et al.

PERSOONIA (2018)

Article Mycology

Fungal diversity notes 840-928: micro-fungi 4associated with Pandanaceae

Saowaluck Tibpromma et al.

FUNGAL DIVERSITY (2018)

Article Plant Sciences

Trichoderma down under: species diversity and occurrence of Trichoderma in New Zealand

M. Braithwaite et al.

AUSTRALASIAN PLANT PATHOLOGY (2017)

Article Mycology

Clavicipitaceous entomopathogens: new species in Metarhizium and a new genus Nigelia

J. Jennifer Luangsa-ard et al.

MYCOLOGICAL PROGRESS (2017)

Article Mycology

Fungal Planet description sheets: 625-715

P. W. Crous et al.

PERSOONIA (2017)

Article Mycology

Didymellaceae revisited

Q. Chen et al.

STUDIES IN MYCOLOGY (2017)

Article Microbiology

Novel soil-inhabiting clades fill gaps in the fungal tree of life

Leho Tedersoo et al.

MICROBIOME (2017)

Article Mycology

Emerging citrus diseases in Europe caused by species of Diaporthe

Vladimiro Guarnaccia et al.

IMA FUNGUS (2017)

Article Mycology

Diaporthe is paraphyletic

Yahui Gao et al.

IMA FUNGUS (2017)

Article Mycology

Asexual and sexual morphs of Moesziomyces revisited

Julia Kruse et al.

IMA FUNGUS (2017)

Article Mycology

The current status of species in Diaporthe

A. J. Dissanayake et al.

MYCOSPHERE (2017)

Article Mycology

Revisiting the genus Cytospora and allied species

C. Norphanphoun et al.

MYCOSPHERE (2017)

Article Oceanography

Fungal diversity in deep-sea sediments associated with asphalt seeps at the Sao Paulo Plateau

Yuriko Nagano et al.

DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2017)

Article Green & Sustainable Science & Technology

Litter decomposition in forest ecosystems: a review

M. P. Krishna et al.

ENERGY ECOLOGY AND ENVIRONMENT (2017)

Article Microbiology

Fungal Diversity Revisited: 2.2 to 3.8 Million Species

David L. Hawksworth et al.

MICROBIOLOGY SPECTRUM (2017)

Article Mycology

Taxonomy and phylogeny of dematiaceous coelomycetes

Nalin N. Wijayawardene et al.

FUNGAL DIVERSITY (2016)

Article Ecology

Arctic driftwood reveals unexpectedly rich fungal diversity

Robert A. Blanchette et al.

FUNGAL ECOLOGY (2016)

Article Ecology

Global biogeography of marine fungi is shaped by the environment

Kaho H. Tisthammer et al.

FUNGAL ECOLOGY (2016)

Article Microbiology

Starmerella orientalis f.a., sp nov., an ascomycetous yeast species isolated from flowers

Nayyereh Alimadadi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)

Article Mycology

Botryosphaeriaceae: Current status of genera and species

A. J. Dissanayake et al.

MYCOSPHERE (2016)

Article Biotechnology & Applied Microbiology

Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

Duangdao Wichadakul et al.

BMC GENOMICS (2015)

Article Mycology

Resolving the Phoma enigma

Q. Chen et al.

STUDIES IN MYCOLOGY (2015)

Article Genetics & Heredity

The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis

Leszek P. Pryszcz et al.

PLOS GENETICS (2015)

Article Mycology

Recommended names for pleomorphic genera in Dothideomycetes

Amy Y. Rossman et al.

IMA FUNGUS (2015)

Article Multidisciplinary Sciences

Global diversity and geography of soil fungi

Leho Tedersoo et al.

SCIENCE (2014)

Article Mycology

Pyrenophora

H. A. Ariyawansa et al.

MYCOSPHERE (2014)

Review Microbiology

Fungal diversity from various marine habitats deduced through culture-independent studies

Cathrine Sumathi Manohar et al.

FEMS MICROBIOLOGY LETTERS (2013)

Article Mycology

Species concepts in Cercospora: spotting the weeds among the roses

J. Z. Groenewald et al.

STUDIES IN MYCOLOGY (2013)

Article Mycology

Alternaria redefined

J. H. C. Woudenberg et al.

STUDIES IN MYCOLOGY (2013)

Article Mycology

The Botryosphaeriaceae: genera and species known from culture

A. J. L. Phillips et al.

STUDIES IN MYCOLOGY (2013)

Article Mycology

Coelomycetes

Nalin N. Wijayawardene et al.

CRYPTOGAMIE MYCOLOGIE (2012)

Article Mycology

Phyllosticta species associated with citrus diseases in China

Xinghong Wang et al.

FUNGAL DIVERSITY (2012)

Review Plant Sciences

One fungus, one name promotes progressive plant pathology

Michael J. Wingfield et al.

MOLECULAR PLANT PATHOLOGY (2012)

Article Plant Sciences

New species of lichenicolous fungi from Bolivia

Adam Flakus et al.

LICHENOLOGIST (2012)

Article Mycology

The Colletotrichum gloeosporioides species complex

B. S. Weir et al.

STUDIES IN MYCOLOGY (2012)

Article Mycology

The Colletotrichum boninense species complex

U. Damm et al.

STUDIES IN MYCOLOGY (2012)

Article Mycology

The Colletotrichum acutatum species complex

U. Damm et al.

STUDIES IN MYCOLOGY (2012)

Article Mycology

The genus Cladosporium

K. Bensch et al.

STUDIES IN MYCOLOGY (2012)

Article Plant Sciences

THE FUNGI: 1, 2, 3 ... 5.1 MILLION SPECIES?

Meredith Blackwell

AMERICAN JOURNAL OF BOTANY (2011)

Review Entomology

The Role of Phytopathogenicity in Bark Beetle-Fungus Symbioses: A Challenge to the Classic Paradigm

Diana L. Six et al.

ANNUAL REVIEW OF ENTOMOLOGY, VOL 56 (2011)

Article Soil Science

Lack of home-field advantage in the decomposition of leaf litter in the Atlantic Rainforest of Brazil

Urs Christian Giesselmann et al.

APPLIED SOIL ECOLOGY (2011)

Review Plant Sciences

Are there more marine fungi to be described?

E. B. Gareth Jones

BOTANICA MARINA (2011)

Review Mycology

Fusarium species associated with plants in Australia

Brett A. Summerell et al.

FUNGAL DIVERSITY (2011)

Article Mycology

Phyllosticta-an overview of current status of species recognition

Saowanee Wikee et al.

FUNGAL DIVERSITY (2011)

Article Ecology

Patterns of fungal diversity and composition along a salinity gradient

Devon J. Mohamed et al.

ISME JOURNAL (2011)

Article Mycology

Two new species of Capnobotryella from historical monuments

Hacer Bakir Sert et al.

MYCOLOGICAL PROGRESS (2011)

Review Mycology

Biogeography and phylogeography of Fusarium: a review

Brett A. Summerell et al.

FUNGAL DIVERSITY (2010)

Article Mycology

Colletotrichum gloeosporioides is not a common pathogen on tropical fruits

Sittisack Phoulivong et al.

FUNGAL DIVERSITY (2010)

Article Mycology

A new Coniosporium species from historical marble monuments

Hacer B. Sert et al.

MYCOLOGICAL PROGRESS (2010)

Article Mycology

Phylogeny of rock-inhabiting fungi related to Dothideomycetes

C. Ruibal et al.

STUDIES IN MYCOLOGY (2010)

Article Mycology

Phylogeny and systematics of the genus Calonectria

L. Lombard et al.

STUDIES IN MYCOLOGY (2010)

Article Microbiology

Metagenomic analysis of stressed coral holobionts

Rebecca Vega Thurber et al.

ENVIRONMENTAL MICROBIOLOGY (2009)

Article Mycology

Unravelling Mycosphaerella: do you believe in genera?

P. W. Crous et al.

PERSOONIA (2009)

Article Mycology

A new species of Capnobotryella from monument surfaces

Hacer (Bakir) Sert et al.

MYCOLOGICAL RESEARCH (2007)

Article Plant Sciences

Sarcinomyces sideticae, a new black yeast from historical marble monuments in Side (Antalya, Turkey)

Hacer B. Sert et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2007)

Article Ecology

A phylogenetic evaluation of whether endophytes become saprotrophs at host senescence

Itthayakorn Promputtha et al.

MICROBIAL ECOLOGY (2007)

Article Mycology

Phylogenetic classification of Cordyceps and the clavicipitaceous fungi

Gi-Ho Sung et al.

STUDIES IN MYCOLOGY (2007)

Article Microbiology

Microcolonial fungi from antique marbles in Perge/Side/Termessos (Antalya/Turkey)

Hacer (Bakir) Sert et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2007)

Review Ecology

Cryptic species as a window on diversity and conservation

David Bickford et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Review Biodiversity Conservation

Diversity of saprobic microfungi

Kevin D. Hyde et al.

BIODIVERSITY AND CONSERVATION (2007)

Article Plant Sciences

Graphium samogiticum -: a new hyphomycete species from Lithuania

Jurga Motiejunaite

NOVA HEDWIGIA (2006)

Review Genetics & Heredity

Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution

Bernard Dujon

TRENDS IN GENETICS (2006)

Article Plant Sciences

Distinct species exist within the Cercospora apii morphotype

M Groenewald et al.

PHYTOPATHOLOGY (2005)

Article Dermatology

Pulmonary zygomycosis - a rare angioinvasive fungal infection

J Lewejohann et al.

MYCOSES (2005)

Article Economics

Locational asymmetry and the potential for cooperation on a canal

I Ray et al.

JOURNAL OF DEVELOPMENT ECONOMICS (2002)

Article Mycology

Are there any substrate preferences in aquatic hyphomycetes?

V Gulis

MYCOLOGICAL RESEARCH (2001)

Article Multidisciplinary Sciences

Biodiversity hotspots for conservation priorities

N Myers et al.

NATURE (2000)

Review Veterinary Sciences

Iron storage diseases in birds

SC Cork

AVIAN PATHOLOGY (2000)