Related references
Note: Only part of the references are listed.Optimization of metabolomic data processing using NOREVA
Jianbo Fu et al.
NATURE PROTOCOLS (2022)
Reconstruction of tissue-specific genome-scale metabolic models for human cancer stem cells
Tania Barata et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2022)
Key summary of German national treatment guidance for hospitalized COVID-19 patients Key pharmacologic recommendations from a national German living guideline using an Evidence to Decision Framework (last updated 17.05.2021)
Jakob J. Malin et al.
INFECTION (2022)
Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells
Zharko Daniloski et al.
CELL (2021)
Lipid profile as an indicator of COVID-19 severity: A systematic review and meta-analysis
Roshan Kumar Mahat et al.
CLINICAL NUTRITION ESPEN (2021)
Identification of Niemann-Pick C1 protein as a potential novel SARS-CoV-2 intracellular target
Isabel Garcia-Dorival et al.
ANTIVIRAL RESEARCH (2021)
Vitamin A in resistance to and recovery from infection: relevance to SARS-CoV2
C. B. Stephensen et al.
BRITISH JOURNAL OF NUTRITION (2021)
Genetic Screens Identify Host Factors for SARS-CoV-2 and Common Cold Coronaviruses
Ruofan Wang et al.
CELL (2021)
Functional interrogation of a SARS-CoV-2 host protein interactome identifies unique and shared coronavirus host factors
H-Heinrich Hoffmann et al.
CELL HOST & MICROBE (2021)
S-acylation controls SARS-CoV-2 membrane lipid organization and enhances infectivity
Francisco S. Mesquita et al.
DEVELOPMENTAL CELL (2021)
Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis
Shalini Aggarwal et al.
JOURNAL OF PROTEOME RESEARCH (2021)
Survival Factors and Metabolic Pathogenesis in Elderly Patients (≥65) With COVID-19: A Multi-Center Study
Qi Mei et al.
FRONTIERS IN MEDICINE (2021)
Genome-scale metabolic modeling reveals SARS-CoV-2-induced metabolic changes and antiviral targets
Kuoyuan Cheng et al.
MOLECULAR SYSTEMS BIOLOGY (2021)
Low vitamin D status is associated with coronavirus disease 2019 outcomes: a systematic review and meta-analysis
Nanyang Liu et al.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2021)
Association of Vitamin D Status with SARS-CoV-2 Infection or COVID-19 Severity: A Systematic Review and Meta-analysis
Asma Kazemi et al.
ADVANCES IN NUTRITION (2021)
The Impact of Vitamin D Level on COVID-19 Infection: Systematic Review and Meta-Analysis
Amare Teshome et al.
FRONTIERS IN PUBLIC HEALTH (2021)
The serum metabolome of COVID-19 patients is distinctive and predictive
Ding Shi et al.
METABOLISM-CLINICAL AND EXPERIMENTAL (2021)
Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection
Piyush Nanda et al.
PLOS COMPUTATIONAL BIOLOGY (2021)
SARS-CoV-2 requires cholesterol for viral entry and pathological syncytia formation
David W. Sanders et al.
ELIFE (2021)
Alteration in the Lipid Profile and the Desaturases Activity in Patients With Severe Pneumonia by SARS-CoV-2
Israel Perez-Torres et al.
FRONTIERS IN PHYSIOLOGY (2021)
Vitamin D and lumisterol novel metabolites can inhibit SARS-CoV-2 replication machinery enzymes
Shariq Qayyum et al.
AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2021)
Antiviral strategies targeting host factors and mechanisms obliging plus ssRNA viral pathogens
Supreeti Mahajan et al.
BIOORGANIC & MEDICINAL CHEMISTRY (2021)
A systematic review and meta-analysis of effect of vitamin D levels on the incidence of COVID-19
Luiza Szarpak et al.
CARDIOLOGY JOURNAL (2021)
Genome-scale metabolic modelling of SARS-CoV-2 in cancer cells reveals an increased shift to glycolytic energy production
Elisabeth Yaneske et al.
FEBS LETTERS (2021)
The Molecular Basis of COVID-19 Pathogenesis, Conventional and Nanomedicine Therapy
Shirin Kouhpayeh et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)
Therapeutic and prognostic role of vitamin D for COVID-19 infection: A systematic review and meta-analysis of 43 observational studies
Fausto Petrelli et al.
JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY (2021)
The link between COVID-19 and VItamin D (VIVID): A systematic review and meta-analysis
Aya Bassatne et al.
METABOLISM-CLINICAL AND EXPERIMENTAL (2021)
All-Trans Retinoic Acid Exhibits Antiviral Effect against SARS-CoV-2 by Inhibiting 3CLpro Activity
Takeshi Morita et al.
VIRUSES-BASEL (2021)
Vitamin A Plasma Levels in COVID-19 Patients: A Prospective Multicenter Study and Hypothesis
Phil-Robin Tepasse et al.
NUTRIENTS (2021)
Discovery of re-purposed drugs that slow SARS-CoV-2 replication in human cells
Adam Pickard et al.
PLOS PATHOGENS (2021)
Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target
Alina Renz et al.
GENES (2021)
Low Levels of Few Micronutrients May Impact COVID-19 Disease Progression: An Observational Study on the First Wave
Teresa-Maria Tomasa-Irriguible et al.
METABOLITES (2021)
Cholesterol and Triglyceride Concentrations, COVID-19 Severity, and Mortality: A Systematic Review and Meta-Analysis With Meta-Regression
Angelo Zinellu et al.
FRONTIERS IN PUBLIC HEALTH (2021)
Pharmacological inhibition of fatty acid synthesis blocks SARS-CoV-2 replication
Junjun Chu et al.
NATURE METABOLISM (2021)
Influence of 25-hydroxy-cholecalciferol levels on SARS-CoV-2 infection and COVID-19 severity: A systematic review and meta-analysis
Andrea Crafa et al.
ECLINICALMEDICINE (2021)
Palmitoylation of SARS-CoV-2 S protein is essential for viral infectivity
Zhuanchang Wu et al.
SIGNAL TRANSDUCTION AND TARGETED THERAPY (2021)
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
Franziska Hufsky et al.
BRIEFINGS IN BIOINFORMATICS (2021)
Machine learning-based prediction of COVID-19 diagnosis based on symptoms
Yazeed Zoabi et al.
NPJ DIGITAL MEDICINE (2021)
ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies
Jing Tang et al.
BRIEFINGS IN BIOINFORMATICS (2020)
Coronavirus 2019-nCoV: A brief perspective from the front line
Qingmei Han et al.
JOURNAL OF INFECTION (2020)
Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19
Daniel Blanco-Melo et al.
CELL (2020)
Proteomic and Metabolomic Characterization of COVID-19 Patient Sera
Bo Shen et al.
CELL (2020)
An atlas of human metabolism
Jonathan L. Robinson et al.
SCIENCE SIGNALING (2020)
NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data
Qingxia Yang et al.
NUCLEIC ACIDS RESEARCH (2020)
Cholesterol 25-Hydroxylase inhibits SARS-CoV-2 and other coronaviruses by depleting membrane cholesterol
Shaobo Wang et al.
EMBO JOURNAL (2020)
FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2
Alina Renz et al.
BIOINFORMATICS (2020)
Cholesterol 25-hydroxylase suppresses SARS-CoV-2 replication by blocking membrane fusion
Ruochen Zeng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
HDL-scavenger receptor B type 1 facilitates SARS-CoV-2 entry
Congwen Wei et al.
NATURE METABOLISM (2020)
A metabolic handbook for the COVID-19 pandemic
Janelle S. Ayres
NATURE METABOLISM (2020)
Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic data
Qingxia Yang et al.
BRIEFINGS IN BIOINFORMATICS (2020)
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Laurent Heirendt et al.
NATURE PROTOCOLS (2019)
Simultaneous Improvement in the Precision, Accuracy, and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains
Jing Tang et al.
MOLECULAR & CELLULAR PROTEOMICS (2019)
Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions
Anne Richelle et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Hijacking the Supplies: Metabolism as a Novel Facet of Virus-Host Interaction
Katharine A. Mayer et al.
FRONTIERS IN IMMUNOLOGY (2019)
Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data
Neo Christopher Chung et al.
BMC BIOINFORMATICS (2019)
SREBP-dependent lipidomic reprogramming as a broad-spectrum antiviral target
Shuofeng Yuan et al.
NATURE COMMUNICATIONS (2019)
Current status and applications of genome-scale metabolic models
Changdai Gu et al.
GENOME BIOLOGY (2019)
Flux sampling is a powerful tool to study metabolism under changing environmental conditions
Helena A. Herrmann et al.
NPJ SYSTEMS BIOLOGY AND APPLICATIONS (2019)
Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting
Alyaa M. Abdel-Haleem et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
Hao Wang et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Genome scale metabolic modeling of cancer
Avlant Nilsson et al.
METABOLIC ENGINEERING (2017)
NOREVA: normalization and evaluation of MS-based metabolomics data
Bo Li et al.
NUCLEIC ACIDS RESEARCH (2017)
A Systematic Evaluation of Methods for Tailoring Genome-Scale Metabolic Models
Sjoerd Opdam et al.
CELL SYSTEMS (2017)
Computational modelling of genome-scale metabolic networks and its application to CHO cell cultures
Ziva Rejc et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2017)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
Applicatons of Genome-Scale Metabolic Models in Biotechnology and Systems Medicine
Cheng Zhang et al.
FRONTIERS IN PHYSIOLOGY (2016)
Metabolic Network Prediction of Drug Side Effects
Itay Shaked et al.
CELL SYSTEMS (2016)
Comparison and Analysis of Objective Functions in Flux Balance Analysis
Carlos Eduardo Garcia Sanchez et al.
BIOTECHNOLOGY PROGRESS (2014)
Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling
Rasmus Agren et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
Constraint-based models predict metabolic and associated cellular functions
Aarash Bordbar et al.
NATURE REVIEWS GENETICS (2014)
optGpSampler: An Improved Tool for Uniformly Sampling the Solution-Space of Genome-Scale Metabolic Networks
Wout Megchelenbrink et al.
PLOS ONE (2014)
The sequence read archive: explosive growth of sequencing data
Yuichi Kodama et al.
NUCLEIC ACIDS RESEARCH (2012)
Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT
Rasmus Agren et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Integration of expression data in genome-scale metabolic network reconstructions
Anna S. Blazier et al.
FRONTIERS IN PHYSIOLOGY (2012)
The Sequence Read Archive
Rasko Leinonen et al.
NUCLEIC ACIDS RESEARCH (2011)
iMAT: an integrative metabolic analysis tool
Hadas Zur et al.
BIOINFORMATICS (2010)
Computationally efficient flux variability analysis
Steinn Gudmundsson et al.
BMC BIOINFORMATICS (2010)
Omic data from evolved E-coli are consistent with computed optimal growth from genome-scale models
Nathan E. Lewis et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
What is flux balance analysis?
Jeffrey D. Orth et al.
NATURE BIOTECHNOLOGY (2010)
Flux balance analysis of biological systems: applications and challenges
Karthik Raman et al.
BRIEFINGS IN BIOINFORMATICS (2009)
Seeking Membranes: Positive-Strand RNA Virus Replication Complexes
Mark R. Denison
PLOS BIOLOGY (2008)
Context-specific metabolic networks are consistent with experiments
Scott A. Becker et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
COPASI- A COmplex PAthway SImulator
Stefan Hoops et al.
BIOINFORMATICS (2006)