Related references
Note: Only part of the references are listed.Non-Specific Interactions of Rhizospheric Microbial Communities Support the Establishment of Mimosa acutistipula var. ferrea in an Amazon Rehabilitating Mineland
Paulo Henrique de Oliveira Costa et al.
PROCESSES (2021)
Chronoculture, harnessing the circadian clock to improve crop yield and sustainability
Gareth Steed et al.
SCIENCE (2021)
The Role of Chloroplast Membrane Lipid Metabolism in Plant Environmental Responses
Ron Cook et al.
CELLS (2021)
Plant Secondary Metabolite Biosynthesis and Transcriptional Regulation in Response to Biotic and Abiotic Stress Conditions
Rahmatullah Jan et al.
AGRONOMY-BASEL (2021)
Large-scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near-simultaneous evolutionary origin of all six subfamilies
Erik J. M. Koenen et al.
NEW PHYTOLOGIST (2020)
On the utility of RNA sample pooling to optimize cost and statistical power in RNA sequencing experiments
Alemu Takele Assefa et al.
BMC GENOMICS (2020)
Vegetative functional traits guide plant species selection for initial mineland rehabilitation
Markus Gastauer et al.
ECOLOGICAL ENGINEERING (2020)
Effects of Soil Fertilization on Terpenoids and Other Carbon-Based Secondary Metabolites in Rosmarinus officinalis Plants: A Comparative Study
Maria Angeles Bustamante et al.
PLANTS-BASEL (2020)
The Modification of Circadian Clock Components in Soybean During Domestication and Improvement
Man-Wah Li et al.
FRONTIERS IN GENETICS (2020)
CirGO: an alternative circular way of visualising gene ontology terms
Irina Kuznetsova et al.
BMC BIOINFORMATICS (2019)
Native leguminous plants for mineland revegetation in the eastern Amazon: seed characteristics and germination
Silvio Junio Ramos et al.
NEW FORESTS (2019)
Sequestration of Mn into the cell wall contributes to Mn tolerance in sugarcane (Saccharum officinarum L.)
Shu Yang et al.
PLANT AND SOIL (2019)
Integrative meta-analysis of transcriptomic responses to abiotic stress in cotton
Ahmad Tahmasebi et al.
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2019)
Response of Phenylpropanoid Pathway and the Role of Polyphenols in Plants under Abiotic Stress
Anket Sharma et al.
MOLECULES (2019)
De Novo Transcriptome Assembly and Functional Annotation in Five Species of Bats
Diana D. Moreno-Santillan et al.
SCIENTIFIC REPORTS (2019)
Abiotic and biotic stresses induce a core transcriptome response in rice
Stephen P. Cohen et al.
SCIENTIFIC REPORTS (2019)
Effect of de novo transcriptome assembly on transcript quantification
Ping-Han Hsieh et al.
SCIENTIFIC REPORTS (2019)
Comprehensive mapping of abiotic stress inputs into the soybean circadian clock
Meina Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Overexpression of cinnamyl alcohol dehydrogenase gene from sweetpotato enhances oxidative stress tolerance in transgenic Arabidopsis
Young-Hwa Kim et al.
IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT (2019)
The Pfam protein families database in 2019
Sara El-Gebali et al.
NUCLEIC ACIDS RESEARCH (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Stress and defense responses in plant secondary metabolites production
Tasiu Isah
BIOLOGICAL RESEARCH (2019)
Lignins: Biosynthesis and Biological Functions in Plants
Qingquan Liu et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)
Effects of Different Metals on Photosynthesis: Cadmium and Zinc Affect Chlorophyll Fluorescence in Durum Wheat
Momchil Paunov et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)
Global database of plants with root-symbiotic nitrogen fixation: NodDB
Leho Tedersoo et al.
JOURNAL OF VEGETATION SCIENCE (2018)
Comparative transcriptome analysis of field- and chamber-grown samples of Colobanthus quitensis (Kunth) Bartl, an Antarctic flowering plant
Sung Mi Cho et al.
SCIENTIFIC REPORTS (2018)
Initial growth of Fabaceae species: Combined effects of topsoil and fertilizer application for mineland revegetation
Joyce Reis Silva et al.
FLORA (2018)
Nutrient and water dynamics of Amazonian canga vegetation differ among physiognomies and from those of other neotropical ecosystems
Simone Kuster Mitre et al.
PLANT ECOLOGY (2018)
Climatic factors shaping intraspecific leaf trait variation of a neotropical tree along a rainfall gradient
Matheus L. Souza et al.
PLOS ONE (2018)
Biotechnological potential of plant growth-promoting bacteria from the roots and rhizospheres of endemic plants in ironstone vegetation in southeastern Brazil
Erica Barbosa Felestrino et al.
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2018)
Selecting plant species for practical restoration of degraded lands using a multiple-trait approach
Tereza C. Giannini et al.
AUSTRAL ECOLOGY (2017)
STRIDE: Species Tree Root Inference from Gene Duplication Events
David M. Emms et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Edaphically distinct habitats shape the crown architecture of Lychnophora ericoides Mart. (Asteraceae) on tropical mountaintops
Amauri Pires Bueno et al.
PLANT ECOLOGY (2017)
A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny
Nasim Azani et al.
TAXON (2017)
Plastomes of Mimosoideae: structural and size variation, sequence divergence, and phylogenetic implication
Yin-Huan Wang et al.
TREE GENETICS & GENOMES (2017)
A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors
Donald M. Bryant et al.
CELL REPORTS (2017)
Alcaligenes faecalis associated with Mimosa calodendron rizhosphere assist plant survival in arsenic rich soils
Erica Barbosa Felestrino et al.
JOURNAL OF SOIL SCIENCE AND PLANT NUTRITION (2017)
Concurrent Drought Stress and Vascular Pathogen Infection Induce Common and Distinct Transcriptomic Responses in Chickpea
Ranjita Sinha et al.
FRONTIERS IN PLANT SCIENCE (2017)
Role of genomics and transcriptomics in selection of reintroduction source populations
Xiaoping He et al.
CONSERVATION BIOLOGY (2016)
MOLECULAR PHYLOGENY OF STRYPHNODENDRON (MIMOSOIDEAE, LEGUMINOSAE) AND GENERIC DELIMITATIONS IN THE PIPTADENIA GROUP
Marcelo F. Simon et al.
INTERNATIONAL JOURNAL OF PLANT SCIENCES (2016)
High temperature specifically affects the photoprotective responses of chlorophyll b-deficient wheat mutant lines
Marian Brestic et al.
PHOTOSYNTHESIS RESEARCH (2016)
How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Nicholas J. Schurch et al.
RNA (2016)
Soil-vegetation relationships on a banded ironstone 'island', Carajas Plateau, Brazilian Eastern Amazonia
Jaquelina A. Nunes et al.
ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS (2015)
GOplot: an R package for visually combining expression data with functional analysis
Wencke Walter et al.
BIOINFORMATICS (2015)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Interactions between circadian clocks and photosynthesis for the temporal and spatial coordination of metabolism
Antony N. Dodd et al.
FRONTIERS IN PLANT SCIENCE (2015)
Circadian regulation of abiotic stress tolerance in plants
Jack Grundy et al.
FRONTIERS IN PLANT SCIENCE (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
Informed and automated k-mer size selection for genome assembly
Rayan Chikhi et al.
BIOINFORMATICS (2014)
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Osmotic stress at the barley root affects expression of circadian clock genes in the shoot
Ermias Habte et al.
PLANT CELL AND ENVIRONMENT (2014)
Circadian rhythms of hydraulic conductance and growth are enhanced by drought and improve plant performance
Cecilio F. Caldeira et al.
NATURE COMMUNICATIONS (2014)
Canga biodiversity, a matter of mining
Aleksandra Skirycz et al.
FRONTIERS IN PLANT SCIENCE (2014)
De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba
Susana L. Torales et al.
BMC GENOMICS (2013)
Photosynthetic entrainment of the Arabidopsis thaliana circadian clock
Michael J. Haydon et al.
NATURE (2013)
The genetic causes of convergent evolution
David L. Stern
NATURE REVIEWS GENETICS (2013)
Iron Is Involved in the Maintenance of Circadian Period Length in Arabidopsis
Yong-Yi Chen et al.
PLANT PHYSIOLOGY (2013)
Roles of apoplastic peroxidases, laccases, and lignification in the manganese tolerance of hyperaccumulator Phytolacca americana
Lu Gao et al.
ACTA PHYSIOLOGIAE PLANTARUM (2012)
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Marcel H. Schulz et al.
BIOINFORMATICS (2012)
Transcriptomic and metabolomic analysis of Yukon Thellungiella plants grown in cabinets and their natural habitat show phenotypic plasticity
David R. Guevara et al.
BMC PLANT BIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Interactions between plant circadian clocks and solute transport
Michael J. Haydon et al.
JOURNAL OF EXPERIMENTAL BOTANY (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
Fran Supek et al.
PLOS ONE (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
Copper homeostasis influences the circadian clock in Arabidopsis
Ana Perea-Garcia et al.
PLANT SIGNALING & BEHAVIOR (2010)
Mechanisms of Lipid Transport Involved in Organelle Biogenesis in Plant Cells
Christoph Benning
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY (2009)
Evidence for the adaptive significance of circadian rhythms
Shai Yerushalmi et al.
ECOLOGY LETTERS (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
Type-B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling, and are crucial for low-phosphate adaptation
Koichi Kobayashi et al.
PLANT JOURNAL (2009)
Plant communities on ironstone outcrops: a diverse and endangered Brazilian ecosystem
Claudia M. Jacobi et al.
BIODIVERSITY AND CONSERVATION (2007)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Plant terpenoids: Biosynthesis and ecological functions
Ai-Xia Cheng et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2007)
Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
XZ Mao et al.
BIOINFORMATICS (2005)
Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage
AN Dodd et al.
SCIENCE (2005)
Arabidopsis disrupted in SQD2 encoding sulfolipid synthase is impaired in phosphate-limited growth
B Yu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Induction of shikimate dehydrogenase and peroxidase in pepper (Capsicum annuum L.) seedlings in response to copper stress and its relation to lignification
J Díaz et al.
PLANT SCIENCE (2001)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Share Paper
