Related references
Note: Only part of the references are listed.Comparative genomics reveals different population structures associated with host and geographic origin in antimicrobial-resistant Salmonella enterica
Jingqiu Liao et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Guillaume Gautreau et al.
PLoS Computational Biology (2020)
TheSalmonella entericaPlasmidome as a Reservoir of Antibiotic Resistance
Jean-Guillaume Emond-Rheault et al.
MICROORGANISMS (2020)
Distribution of heavy metal resistance elements in Canadian Salmonella 4,[5],12:i:- populations and association with the monophasic genotypes and phenotype
Clifford G. Clark et al.
PLOS ONE (2020)
The Role of Salmonella Genomic Island 4 in Metal Tolerance of Salmonella enterica Serovar I 4,[5],12:i:- Pork Outbreak Isolate USDA15WA-1
Bradley L. Bearson et al.
GENES (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
Antimicrobial Resistance Genes, Cassettes, and Plasmids Present in Salmonella enterica Associated With United States Food Animals
Elizabeth A. McMillan et al.
FRONTIERS IN MICROBIOLOGY (2019)
SGI-4 in Monophasic Salmonella Typhimurium ST34 Is a Novel ICE That Enhances Resistance to Copper
Priscilla Branchu et al.
FRONTIERS IN MICROBIOLOGY (2019)
Salmonella Genomic Island 3 Is an Integrative and Conjugative Element and Contributes to Copper and Arsenic Tolerance of Salmonella enterica
Nobuo Arai et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2019)
Multidrug-Resistant Salmonella I 4,[5],12:i:- and Salmonella Infantis Infections Linked to Whole Roasted Pigs from a Single Slaughter and Processing Facility
Vance Kawakami et al.
JOURNAL OF FOOD PROTECTION (2019)
SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data
Shaokang Zhang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)
Complete Genome Sequence of Multidrug-Resistant Salmonella enterica Serovar I 4,[5],12:i:- 2015 U.S. Pork Outbreak Isolate USDA15WA-1
Bradley L. Bearson et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2019)
Inferring putative transmission clusters with Phydelity
Alvin X. Han et al.
VIRUS EVOLUTION (2019)
From Louvain to Leiden: guaranteeing well-connected communities
V. A. Traag et al.
SCIENTIFIC REPORTS (2019)
Phylogenetic Characterization of Salmonella enterica Serovar Typhimurium and Its Monophasic Variant Isolated from Food Animals in Japan Revealed Replacement of Major Epidemic Clones in the Last 4 Decades
Nobuo Aral et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2018)
A Comparative Genomic Analysis Provides Novel Insights Into the Ecological Success of the Monophasic Salmonella Serovar 4,[5],12:i:-
Eleonora Mastrorilli et al.
FRONTIERS IN MICROBIOLOGY (2018)
Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:-
Federica Palma et al.
SCIENTIFIC REPORTS (2018)
Salmonella enterica Serotype 4,[5],12:i:- in Swine in the United States Midwest: An Emerging Multidrug-Resistant Clade
Ehud Elnekave et al.
CLINICAL INFECTIOUS DISEASES (2018)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
Bacteriophages Contribute to the Spread of Antibiotic Resistance Genes among Foodborne Pathogens of the Enterobacteriaceae Family - A Review
Anna Colavecchio et al.
FRONTIERS IN MICROBIOLOGY (2017)
Genome Sequence of an Australian Monophasic Salmonella enterica subsp. enterica Typhimurium Isolate (TW-Stm6) Carrying a Large Plasmid with Multiple Antimicrobial Resistance Genes
Mike L. Dyall-Smith et al.
GENOME ANNOUNCEMENTS (2017)
Outbreak of Multidrug-Resistant Salmonella Infections Linked to Pork - Washington, 2015
Vance M. Kawakami et al.
MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT (2016)
Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005-2010
Liljana Petrovska et al.
EMERGING INFECTIOUS DISEASES (2016)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella
Bradley L. Bearson et al.
FRONTIERS IN MICROBIOLOGY (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Keith A. Jolley et al.
BMC BIOINFORMATICS (2010)
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
Adrian Alexa et al.
BIOINFORMATICS (2006)