Reconstruction and analysis of genome-scale metabolic model for thermophilic fungus Myceliophthora thermophila

Myceliophthora thermophila, a thermophilic fungus that can degrade and utilize all major polysaccharides in plant biomass, has great potential in biotechnological industries. Here, the first manually curated genome-scale metabolic model iDL1450 for M. thermophila was reconstructed using an autogenerating pipeline with thorough manual curation. The model contains 1450 genes, 2592 reactions, and 1784 unique metabolites. High accuracy was shown in predictions related to carbon and nitrogen source utilization based on data obtained from Biolog experiments. Besides, metabolism profiles were analyzed using iDL1450 integrated with transcriptomics data of M. thermophila at various growth temperatures. The refined model provides new insights into thermophilic fungi metabolism and sheds light on model-driven strain design to improve biotechnological applications of this thermophilic lignocellulosic fungus.

Automated summary

In this study, a manually curated genome-scale metabolic model iDL1450 for Myceliophthora thermophila was constructed, and its carbon and nitrogen source utilization was validated. Additionally, metabolism analysis was performed using iDL1450 integrated with transcriptomics data, providing new insights into the metabolism of thermophilic fungi.