Related references
Note: Only part of the references are listed.Deep learning techniques have significantly impacted protein structure prediction and protein design
Robin Pearce et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
Highly accurate protein structure prediction for the human proteome
Kathryn Tunyasuvunakool et al.
NATURE (2021)
Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction
Lisa N. Kinch et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2021)
Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures
Jordan J. Clark et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
The functional importance of structure in unstructured protein regions
Norman E. Davey
CURRENT OPINION IN STRUCTURAL BIOLOGY (2019)
On the dynamical incompleteness of the Protein Data Bank
Cristina Marino-Buslje et al.
BRIEFINGS IN BIOINFORMATICS (2019)
How is structural divergence related to evolutionary information?
Diego Zea et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)
Dynamics fingerprints of active conformers of epidermal growth factor receptor kinase
German P. Barletta et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2018)
Homology modeling in a dynamical world
Alexander Miguel Monzon et al.
PROTEIN SCIENCE (2017)
Conformational diversity analysis reveals three functional mechanisms in proteins
Alexander Miguel Monzon et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
Peter Eastman et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Pockets as structural descriptors of EGFR kinase conformations
Marcia Anahi Hasenahuer et al.
PLOS ONE (2017)
Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell
Guanghong Wei et al.
CHEMICAL REVIEWS (2016)
The principle of conformational signaling
Peter Tompa
CHEMICAL SOCIETY REVIEWS (2016)
Conformational Dynamics and Allostery in Pyruvate Kinase
Katherine A. Donovan et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2016)
Evolutionary Conserved Positions Define Protein Conformational Diversity
Tadeo E. Saldano et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Conformational diversity and the emergence of sequence signatures during evolution
Gustavo Parisi et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2015)
Decoding the Mobility and Time Scales of Protein Loops
Yina Gu et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
Substrate tunnels in enzymes: Structure-function relationships and computational methodology
Laura J. Kingsley et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2015)
The Dynamical Nature of Enzymatic Catalysis
Robert Callender et al.
ACCOUNTS OF CHEMICAL RESEARCH (2015)
The ensemble nature of allostery
Hesam N. Motlagh et al.
NATURE (2014)
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
Valerio Mariani et al.
BIOINFORMATICS (2013)
Protein Conformational Diversity Correlates with Evolutionary Rate
Diego Javier Zea et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions
Jianyi Yang et al.
NUCLEIC ACIDS RESEARCH (2013)
Classification of Domain Movements in Proteins Using Dynamic Contact Graphs
Daniel Taylor et al.
PLOS ONE (2013)
Coevolutionary signals across protein lineages help capture multiple protein conformations
Faruck Morcos et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Interplay between allostery and intrinsic disorder in an ensemble
Hesam N. Motlagh et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2012)
Sequence Evolution Correlates with Structural Dynamics
Ying Liu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Unstructural biology coming of age
Peter Tompa
CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)
Molecular Evolution of Protein Conformational Changes Revealed by a Network of Evolutionarily Coupled Residues
Jouhyun Jeon et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
The Effect of Sequence Evolution on Protein Structural Divergence
Simon G. Williams et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
The role of dynamic conformational ensembles in biomolecular recognition
David D. Boehr et al.
NATURE CHEMICAL BIOLOGY (2009)
Structure is three to ten times more conserved than sequence-A study of structural response in protein cores
Kristoffer Illergard et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways
Antonio del Sol et al.
STRUCTURE (2009)
How different are structurally flexible and rigid binding sites? Sequence and structural features discriminating proteins that do and do not undergo conformational change upon ligand binding
Kannan Gunasekaran et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Evolutionary plasticity of protein families: Coupling between sequence and structure variation
AR Panchenko et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Conformational change in substrate binding, catalysis and product release: an open and shut case?
A Gutteridge et al.
FEBS LETTERS (2004)
Crystal structure of unligated guanylate kinase from yeast reveals GMP-induced conformational changes
J Blaszczyk et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Conformational change of proteins arising from normal mode calculations
F Tama et al.
PROTEIN ENGINEERING (2001)
Anisotropy of fluctuation dynamics of proteins with an elastic network model
AR Atilgan et al.
BIOPHYSICAL JOURNAL (2001)
Share Paper
