4.7 Article

Microbiome Clusters Disclose Physiologic Variances in Dairy Cows Challenged by Calving and Lipopolysaccharides

Related references

Note: Only part of the references are listed.
Review Microbiology

Gut microbial metabolites as multi-kingdom intermediates

Kimberly A. Krautkramer et al.

Summary: The gut microbiota influences host physiology through the production of various metabolites. By studying microbial metabolites, researchers have identified potential microbial targets relevant for host health, despite the challenges of understanding host-microbiota interactions.

NATURE REVIEWS MICROBIOLOGY (2021)

Article Multidisciplinary Sciences

Longitudinal evaluation of fecal microbiota transplantation for ameliorating calf diarrhea and improving growth performance

Hyun Sik Kim et al.

Summary: The study demonstrates that fecal microbiota transplantation (FMT) therapy has a positive effect on calf diarrhea, improving gut microbial composition and promoting growth performance.

NATURE COMMUNICATIONS (2021)

Article Agriculture, Dairy & Animal Science

Dietary l-carnitine Supplementation Modifies the Lipopolysaccharide-Induced Acute Phase Reaction in Dairy Cows

Jennifer Meyer et al.

Summary: The study showed that dietary l-carnitine supplementation supported the energy metabolism of dairy cows during an LPS-induced acute phase reaction, mainly by aiding the transport of activated fatty acids to the site of oxidation. Cows supplemented with l-carnitine maintained higher insulin levels during the APR, which may support glucose utilization following the reaction.

ANIMALS (2021)

Article Multidisciplinary Sciences

Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization

Atara Uzan-Yulzari et al.

Summary: Exposure to antibiotics in the neonatal period may affect growth development in boys but not girls, while antibiotic use later in childhood is associated with increased body mass index. Additionally, neonatal antibiotic exposure has long-term effects on gut microbiome, leading to growth impairment in boys during the first six years of life.

NATURE COMMUNICATIONS (2021)

Article Microbiology

Evolution of rumen and oral microbiota in calves is influenced by age and time of weaning

Nida Amin et al.

Summary: The study used buccal swab samples to analyze the rumen and oral microbial communities in calves, finding that the number of rumen-specific bacteria gradually increased as calves aged and early weaning significantly impacted rumen microbial diversity. Late weaning did not affect the rumen microbiota composition. The oral microbial community composition was significantly affected by calf's age and time of weaning.

ANIMAL MICROBIOME (2021)

Article Multidisciplinary Sciences

A dataset of four probiotic Bifidobacterium strains genome assemblies

Aleksei A. Korzhenkov et al.

Summary: A dataset of four draft genome sequences of Bifidobacterium strains is presented, highlighting high completeness and low contamination levels. Genetic determinants of probiotic capabilities were identified, expanding knowledge on genomic diversity of probiotic strains of Bifidobacterium genus. The dataset is available in NCBI and Mendeley Data repository.

DATA IN BRIEF (2021)

Article Agriculture, Dairy & Animal Science

Review: Overview of factors affecting productive lifespan of dairy cows

A. De Vries et al.

ANIMAL (2020)

Meeting Abstract Biochemistry & Molecular Biology

Hypoxia and Hypercapnia Diminish Intestinal Barrier Integrity in a Human Enteroid Model System

Gregory Weber et al.

FASEB JOURNAL (2020)

Article Biochemistry & Molecular Biology

Adapting with Microbial Help: Microbiome Flexibility Facilitates Rapid Responses to Environmental Change

Christian R. Voolstra et al.

BIOESSAYS (2020)

Article Agriculture, Dairy & Animal Science

The impact of feed efficiency selection on the ruminal, cecal, and fecal microbiomes of Angus steers from a commercial feedlot

Christina B. Welch et al.

JOURNAL OF ANIMAL SCIENCE (2020)

Review Biochemistry & Molecular Biology

Oxygen battle in the gut: Hypoxia and hypoxia-inducible factors in metabolic and inflammatory responses in the intestine

Rashi Singhal et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2020)

Review Agriculture, Dairy & Animal Science

Targeting the Hindgut to Improve Health and Performance in Cattle

M. Victoria Sanz-Fernandez et al.

ANIMALS (2020)

Review Biochemistry & Molecular Biology

Trimethyllysine: From Carnitine Biosynthesis to Epigenetics

Marijn N. Maas et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Letter Biotechnology & Applied Microbiology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen et al.

NATURE BIOTECHNOLOGY (2019)

Article Multidisciplinary Sciences

Temporal Stability of the Ruminal Bacterial Communities in Beef Steers

Brooke A. Clemmons et al.

SCIENTIFIC REPORTS (2019)

Review Gastroenterology & Hepatology

Intestinal gases: influence on gut disorders and the role of dietary manipulations

Kourosh Kalantar-Zadeh et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2019)

Article Nutrition & Dietetics

Microbial enterotypes in personalized nutrition and obesity management

Lars Christensen et al.

AMERICAN JOURNAL OF CLINICAL NUTRITION (2018)

Article Agriculture, Dairy & Animal Science

Identification of biological traits associated with differences in residual energy intake among lactating Holstein cows

A. Fischer et al.

JOURNAL OF DAIRY SCIENCE (2018)

Article Agriculture, Dairy & Animal Science

Short communication: Signs of host genetic regulation in the microbiome composition in 2 dairy breeds: Holstein and Brown Swiss

O. Gonzalez-Recio et al.

JOURNAL OF DAIRY SCIENCE (2018)

Article Microbiology

CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software

Toby J. Wilkinson et al.

FRONTIERS IN MICROBIOLOGY (2018)

Article Agriculture, Dairy & Animal Science

Review: Enhancing gastrointestinal health in dairy cows

J. C. Plaizier et al.

ANIMAL (2018)

Review Multidisciplinary Sciences

Colonocyte metabolism shapes the gut microbiota

Yael Litvak et al.

SCIENCE (2018)

Article Agriculture, Dairy & Animal Science

A 100-Year Review: From ascorbic acid to zinc-Mineral and vitamin nutrition of dairy cows

W. P. Weiss

JOURNAL OF DAIRY SCIENCE (2017)

Article Computer Science, Interdisciplinary Applications

lmerTest Package: Tests in Linear Mixed Effects Models

Alexandra Kuznetsova et al.

JOURNAL OF STATISTICAL SOFTWARE (2017)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Article Agriculture, Dairy & Animal Science

Effects of grain feeding on microbiota in the digestive tract of cattle

E. Khafipour et al.

ANIMAL FRONTIERS (2016)

Article Agriculture, Dairy & Animal Science

Heat-treated colostrum feeding promotes beneficial bacteria colonization in the small intestine of neonatal calves

Nilusha Malmuthuge et al.

JOURNAL OF DAIRY SCIENCE (2015)

Article Computer Science, Interdisciplinary Applications

Fitting Linear Mixed-Effects Models Using lme4

Douglas Bates et al.

JOURNAL OF STATISTICAL SOFTWARE (2015)

Article Multidisciplinary Sciences

The ecology of the microbiome: Networks, competition, and stability

Katharine Z. Coyte et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Transfer of intestinal bacterial components to mammary secretions in the cow

Wayne Young et al.

PEERJ (2015)

Editorial Material Microbiology

Rethinking Enterotypes

Dan Knights et al.

CELL HOST & MICROBE (2014)

Article Biochemistry & Molecular Biology

Ribosomal Database Project: data and tools for high throughput rRNA analysis

James R. Cole et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Agriculture, Dairy & Animal Science

Effect of monensin on in vitro fermentation of silages and microbial protein synthesis

Gerald Wischer et al.

ARCHIVES OF ANIMAL NUTRITION (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Veterinary Sciences

Metabolic Control of Feed Intake Implications for Metabolic Disease of Fresh Cows

Michael S. Allen et al.

VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE (2013)

Review Multidisciplinary Sciences

Diversity, stability and resilience of the human gut microbiota

Catherine A. Lozupone et al.

NATURE (2012)

Article Agriculture, Dairy & Animal Science

Associations between several aspects of heifer development and dairy cow survivability to second lactation

A. Bach

JOURNAL OF DAIRY SCIENCE (2011)

Article Multidisciplinary Sciences

Enterotypes of the human gut microbiome

Manimozhiyan Arumugam et al.

NATURE (2011)

Article Agriculture, Dairy & Animal Science

A grain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation

E. Khafipour et al.

JOURNAL OF DAIRY SCIENCE (2009)

Article Veterinary Sciences

Subacute ruminal acidosis in dairy cows: The physiological causes, incidence and consequences

J. C. Plaizier et al.

VETERINARY JOURNAL (2008)

Article Biotechnology & Applied Microbiology

Real-time PCR determination of rRNA gene copy number:: absolute and relative quantification assays with Escherichia coli

Changsoo Lee et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2008)

Article Agriculture, Dairy & Animal Science

Effects of cow diet on the microbial community and organic matter and nitrogen content of Feces

P. C. J. van Vliet et al.

JOURNAL OF DAIRY SCIENCE (2007)

Article Biotechnology & Applied Microbiology

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Qiong Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Biochemistry & Molecular Biology

Leaky guts and lipid rafts

EC Boyle et al.

TRENDS IN MICROBIOLOGY (2005)