Related references
Note: Only part of the references are listed.The geographical origin, refugia, and diversification of honey bees (Apis spp.) based on biogeography and niche modeling
Yongkun Ji
APIDOLOGIE (2021)
Improving bee health through genomics
Christina M. Grozinger et al.
NATURE REVIEWS GENETICS (2020)
The mitochondrial genome of the Spanish honey bee, Apis mellifera iberiensis (Insecta: Hymenoptera: Apidae), from Portugal
Leigh Boardman et al.
MITOCHONDRIAL DNA PART B-RESOURCES (2020)
Honey bee survival mechanisms against the parasite Varroa destructor: a systematic review of phenotypic and genomic research efforts
Fanny Mondet et al.
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2020)
Insights into Ethiopian honey bee diversity based on wing geomorphometric and mitochondrial DNA analyses
Teweldemedhn Gebretinsae Hailu et al.
APIDOLOGIE (2020)
Defense Response in Brazilian Honey Bees (Apis mellifera scutellata x spp.) Is Underpinned by Complex Patterns of Admixture
Brock A. Harpur et al.
GENOME BIOLOGY AND EVOLUTION (2020)
A revision of subspecies structure of western honey bee Apis mellifera
Rustem A. Ilyasov et al.
SAUDI JOURNAL OF BIOLOGICAL SCIENCES (2020)
Gene reuse facilitates rapid radiation and independent adaptation to diverse habitats in the Asian honeybee
Yongkun Ji et al.
SCIENCE ADVANCES (2020)
Egg transcriptome profile responds to maternal virus infection in honey bees, Apis mellifera
Esmaeil Amiri et al.
INFECTION GENETICS AND EVOLUTION (2020)
Integrative Genomics Reveals the Genetics and Evolution of the Honey Bee's Social Immune System
Brock A. Harpur et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Recent advances in population and quantitative genomics of honey bees
Kathleen A. Dogantzis et al.
CURRENT OPINION IN INSECT SCIENCE (2019)
A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds
Andreas Wallberg et al.
BMC GENOMICS (2019)
Minor allele frequency thresholds strongly affect population structure inference with genomic data sets
Ethan Linck et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis)
Dora Henriques et al.
EVOLUTIONARY APPLICATIONS (2018)
Population Genomics Provide Insights into the Evolution and Adaptation of the Eastern Honey Bee (Apis cerana)
Chao Chen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
High sample throughput genotyping for estimating C-lineage introgression in the dark honeybee: an accurate and cost-effective SNP-based tool
Dora Henriques et al.
SCIENTIFIC REPORTS (2018)
Insects with similar social complexity show convergent patterns of adaptive molecular evolution
Kathleen A. Dogantzis et al.
SCIENTIFIC REPORTS (2018)
Direct Determination of the Mutation Rate in the Bumblebee Reveals Evidence for Weak Recombination-Associated Mutation and an Approximate Rate Constancy in Insects
Haoxuan Liu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
SNPs selected by information content outperform randomly selected microsatellite loci for delineating genetic identification and introgression in the endangered dark European honeybee (Apis mellifera mellifera)
Irene Munoz et al.
MOLECULAR ECOLOGY RESOURCES (2017)
The Complex Demographic History and Evolutionary Origin of the Western Honey Bee, Apis Mellifera
Julie M. Cridland et al.
GENOME BIOLOGY AND EVOLUTION (2017)
Queens and Workers Contribute Differently to Adaptive Evolution in Bumble Bees and Honey Bees
Brock A. Harpur et al.
GENOME BIOLOGY AND EVOLUTION (2017)
Admixture and Ancestry Inference from Ancient and Modern Samples through Measures of Population Genetic Drift
Alexandre M. Harris et al.
HUMAN BIOLOGY (2017)
Transcriptional signatures of parasitization and markers of colony decline in Varroa-infested honey bees (Apis mellifera)
Virginia Zanni et al.
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2017)
Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees
Andreas Wallberg et al.
PLOS GENETICS (2017)
Mitochondrial DNA variation of Apis mellifera iberiensis: further insights from a large-scale study using sequence data of the tRNAleu-cox2 intergenic region
Julio Chavez-Galarza et al.
APIDOLOGIE (2017)
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
Christine G. Elsik et al.
NUCLEIC ACIDS RESEARCH (2016)
Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee Subspecies Apis mellifera sinisxinyuan n. ssp
Chao Chen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly
David Wragg et al.
SCIENTIFIC REPORTS (2016)
MicroRNAs in Honey Bee Caste Determination
Regan Ashby et al.
SCIENTIFIC REPORTS (2016)
Using Whole-Genome Sequence Information to Foster Conservation Efforts for the European Dark Honey Bee, Apis mellifera mellifera
Melanie Parejo et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2016)
Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools
Zachary L. Fuller et al.
BMC GENOMICS (2015)
A selective sweep in a Varroa destructor resistant honeybee (Apis mellifera) population
H. Michael G. Lattorff et al.
INFECTION GENETICS AND EVOLUTION (2015)
Revisiting the Iberian honey bee (Apis mellifera iberiensis) contact zone: maternal and genome-wide nuclear variations provide support for secondary contact from historical refugia
Julio Chavez-Galarza et al.
MOLECULAR ECOLOGY (2015)
Genomic evidence for the Pleistocene and recent population history of Native Americans
Maanasa Raghavan et al.
SCIENCE (2015)
Reduced SNP Panels for Genetic Identification and Introgression Analysis in the Dark Honey Bee (Apis mellifera mellifera)
Irene Munoz et al.
PLOS ONE (2015)
Draft genome sequence of the Algerian bee Apis mellifera intermissa
Nizar Jamal Haddad et al.
GENOMICS DATA (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Finding the missing honey bee genes: lessons learned from a genome upgrade
Christine G. Elsik et al.
BMC GENOMICS (2014)
Genetic integrity of the Dark European honey bee (Apis mellifera mellifera) from protected populations: a genome-wide assessment using SNPs and mtDNA sequence data
M. Alice Pinto et al.
JOURNAL OF APICULTURAL RESEARCH (2014)
A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera
Andreas Wallberg et al.
NATURE GENETICS (2014)
Population genomics of the honey bee reveals strong signatures of positive selection on worker traits
Brock A. Harpur et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Pleiotropy constrains the evolution of protein but not regulatory sequences in a transcription regulatory network influencing complex social behaviors
Daria Molodtsova et al.
FRONTIERS IN GENETICS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Maternal diversity patterns of Ibero-Atlantic populations reveal further complexity of Iberian honeybees
Maria Alice Pinto et al.
APIDOLOGIE (2013)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
NextGenMap: fast and accurate read mapping in highly polymorphic genomes
Fritz J. Sedlazeck et al.
BIOINFORMATICS (2013)
Functional dissection of the splice variants of the Drosophila gene homothorax (hth)
Elise Corsetti et al.
DEVELOPMENTAL BIOLOGY (2013)
Honey bee protein atlas at organ-level resolution
Queenie W. T. Chan et al.
GENOME RESEARCH (2013)
Greater past disparity and diversity hints at ancient migrations of European honey bee lineages into Africa and Asia
Ulrich Kotthoff et al.
JOURNAL OF BIOGEOGRAPHY (2013)
Bayesian Analysis of Biogeography when the Number of Areas is Large
Michael J. Landis et al.
SYSTEMATIC BIOLOGY (2013)
A high-performance computing toolset for relatedness and principal component analysis of SNP data
Xiuwen Zheng et al.
BIOINFORMATICS (2012)
Ancient Admixture in Human History
Nick Patterson et al.
GENETICS (2012)
Management increases genetic diversity of honey bees via admixture
Brock A. Harpur et al.
MOLECULAR ECOLOGY (2012)
The probability of genetic parallelism and convergence in natural populations
Gina L. Conte et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
From where did the Western honeybee (Apis mellifera) originate?
Fan Han et al.
ECOLOGY AND EVOLUTION (2012)
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
Joseph K. Pickrell et al.
PLOS GENETICS (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
David H. Alexander et al.
BMC BIOINFORMATICS (2011)
Assessing population structure: F-ST and related measures
Patrick G. Meirmans et al.
MOLECULAR ECOLOGY RESOURCES (2011)
A molecular phylogeny of the genus Apis suggests that the Giant Honey Bee of the Philippines, A-breviligula Maa, and the Plains Honey Bee of southern India, A-indica Fabricius, are valid species
Nathan Lo et al.
SYSTEMATIC ENTOMOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
Reconstructing ancestral ranges in historical biogeography: properties and prospects
Kristin S. Lamm et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2009)
Mitochondrial discrimination of honeybees (Apis mellifera) of Sudan
Mogbel A. A. El-Niweiri et al.
APIDOLOGIE (2008)
adegenet:: a R package for the multivariate analysis of genetic markers
Thibaut Jombart
BIOINFORMATICS (2008)
Bridging the Synaptic Gap: Neuroligins and Neurexin I in Apis mellifera
Sunita Biswas et al.
PLOS ONE (2008)
Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis
Richard H. Ree et al.
SYSTEMATIC BIOLOGY (2008)
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
Sharon R. Browning et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Phylogenetic analysis of honey bee behavioral evolution
Rika Raffiudin et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)
Thrice out of Africa:: Ancient and recent expansions of the honey bee, Apis mellifera
Charles W. Whitfield et al.
SCIENCE (2006)
Phylogenetic relationships of honey bees (Hymenoptera:Apinae:Apini) inferred from nuclear and mitochondrial DNA sequence data
MC Arias et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2005)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Genetic diversity of the honeybee in Africa: microsatellite and mitochondrial data
P Franck et al.
HEREDITY (2001)