Drug susceptibility and molecular epidemiology of Escherichia coli in bloodstream infections in Shanxi, China

Objectives. We carried out a retrospective study to investigate the drug susceptibility and genetic relationship of clinical Escherichia coli isolates from patients with BSIs in Shanxi, China. Methods. E. coli isolates causing BSIs were consecutively collected from June 2019 to March 2020. Antimicrobial susceptibility testing was performed by broth microdilution method. PCR was used to detect antimicrobial resistance genes coding for extended-spectrum beta-lactamases (ESBLs), phylogenetic groups and seven housekeeping genes of E. coli. Results. A total of 76 E. coli were collected. Antimicrobial susceptibility testing revealed that the top six E. coli resistant antibiotics were ampicillin (90.7%), ciprofloxacin (69.7%), cefazolin (65.7%), levofloxacin (63.1%), ceftriaxone and cefotaxime (56.5%). Among the 76 isolates, 43 produced ESBLs. Molecular analysis showed that CTX-M-14 was the most common ESBLs, followed by CTX-M-15 and CTX-M-55. Phylogenetic group D (42.2%) predominated, followed by group B2 (34.2%), group A (18.4%) and group B1 (5.2%). The most prevalent sequence types (STs) were ST131 (15/76), ST69 (1 2 / 7 6) and ST38 (6/76). Conclusions. This study is the first to report the phenotypic and molecular characteristics of E. coli isolated from BSIs in Shanxi, China. Our results indicated a high prevalence of MDR in E. coli strains isolated from BSIs and a serious spread of ESBL genes in Shanxi, especially the epidemiological bla(CTX-N_M). Phylogenetic analysis indicated genetic diversity among E. coli BSIs isolates.

Automated summary

This study investigated the drug susceptibility and genetic relationship of clinical Escherichia coli isolates from patients with BSIs in Shanxi, China. The results revealed a high prevalence of MDR in E. coli strains isolated from BSIs and a serious spread of ESBL genes in Shanxi. Phylogenetic analysis indicated genetic diversity among E. coli BSIs isolates.