Related references
Note: Only part of the references are listed.Incomplete bioinformatic filtering and inadequate age and growth analysis lead to an incorrect inference of harvested-induced changes
Wesley A. Larson et al.
EVOLUTIONARY APPLICATIONS (2021)
Double-digest RAD-sequencing: do pre- and post-sequencing protocol parameters impact biological results?
Tristan Cumer et al.
MOLECULAR GENETICS AND GENOMICS (2021)
Depicting the mating system and patterns of contemporary pollen flow in trees of the genus Anadenanthera (Fabaceae)
Juliana Massimino Feres et al.
PEERJ (2021)
The historical context of contemporary climatic adaptation: a case study in the climatically dynamic and environmentally complex southwestern United States
Rob Massatti et al.
ECOGRAPHY (2020)
Parentage and relatedness reconstruction in Pinus sylvestris using genotyping-by-sequencing
David Hall et al.
HEREDITY (2020)
Estimating effective population size using RADseq: Effects of SNP selection and sample size
Florianne Marandel et al.
ECOLOGY AND EVOLUTION (2020)
Size reductions and genomic changes within two generations in wild walleye populations: associated with harvest?
Ella Bowles et al.
EVOLUTIONARY APPLICATIONS (2020)
Using spatial genetic structure of a population of Swietenia macrophylla King to integrate genetic diversity into management strategies in Southwestern Amazon
Sabrina Silva de Oliveira et al.
FOREST ECOLOGY AND MANAGEMENT (2020)
Population Genomics in Rhamdia quelen (Heptapteridae, Siluriformes) Reveals Deep Divergence and Adaptation in the Neotropical Region
Nestor Rios et al.
GENES (2020)
Fine-scale spatial genetic structure, mating, and gene dispersal patterns inParkia biglobosapopulations with different levels of habitat fragmentation
Djingdia Lompo et al.
AMERICAN JOURNAL OF BOTANY (2020)
Genetic evidence for the origin ofAedes aegypti, the yellow fever mosquito, in the southwestern Indian Ocean
John Soghigian et al.
MOLECULAR ECOLOGY (2020)
Dispersal barriers and opportunities drive multiple levels of phylogeographic concordance in the Southern Alps of New Zealand
Katharine A. Marske et al.
MOLECULAR ECOLOGY (2020)
High rates of pollen and seed flow in Hymenaea stigonocarpa on a highly fragmented savanna landscape in Brazil
Andrea S. Garcia et al.
NEW FORESTS (2019)
Seed and pollen dispersal distances in two African legume timber trees and their reproductive potential under selective logging
Olivier J. Hardy et al.
MOLECULAR ECOLOGY (2019)
Selecting RAD-Seq Data Analysis Parameters for Population Genetics: The More the Better?
Natalia Diaz-Arce et al.
FRONTIERS IN GENETICS (2019)
Environmental heterogeneity and not vicariant biogeographic barriers generate community-wide population structure in desert-adapted snakes
Edward A. Myers et al.
MOLECULAR ECOLOGY (2019)
HAWKMOTH POLLINATION FACILITATES LONG-DISTANCE POLLEN DISPERSAL AND REDUCES ISOLATION ACROSS A GRADIENT OF LAND-USE CHANGE
Krissa A. Skogen et al.
ANNALS OF THE MISSOURI BOTANICAL GARDEN (2019)
Stacks 2: Analytical methods for paired-end sequencing improve RADseq-based population genomics
Nicolas C. Rochette et al.
MOLECULAR ECOLOGY (2019)
Exploring the drivers of population structure across desert snakes can help to link micro and macroevolution
Laura R. V. Alencar et al.
MOLECULAR ECOLOGY (2019)
Evolving in isolation: Genetic tests reject recent connections of Amazonian savannas with the central Cerrado
Luciana C. Resende-Moreira et al.
JOURNAL OF BIOGEOGRAPHY (2019)
Causes and analytical impacts of missing data in RADseq phylogenetics: Insights from an African frog (Afrixalus)
Marco Crotti et al.
ZOOLOGICA SCRIPTA (2019)
Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation
Sarah P. Flanagan et al.
EVOLUTIONARY APPLICATIONS (2018)
Riparian forest corridors: A prioritization analysis to the Landscape Sample Units of the Brazilian National Forest Inventory
Maria Augusta Doetzer Rosot et al.
ECOLOGICAL INDICATORS (2018)
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Shannon J. O'Leary et al.
MOLECULAR ECOLOGY (2018)
Genotyping-by-sequencing for estimating relatedness in nonmodel organisms: Avoiding the trap of precise bias
Catherine R. M. Attard et al.
MOLECULAR ECOLOGY RESOURCES (2018)
A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data
Kimberly R. Andrews et al.
MOLECULAR ECOLOGY RESOURCES (2018)
The effect of missing data on coalescent species delimitation and a taxonomic revision of whipsnakes (Colubridae: Masticophis)
Kyle O'Connell et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)
How to estimate kinship
Jerome Goudet et al.
MOLECULAR ECOLOGY (2018)
Genomic data recover previously undetectable fragmentation effects in an endangered amphibian
Evan McCartney-Melstad et al.
MOLECULAR ECOLOGY (2018)
Paternity analysis, pollen flow, and spatial genetic structure of a natural population of Euterpe precatoria in the Brazilian Amazon
Santiago Linorio Ferreyra Ramos et al.
ECOLOGY AND EVOLUTION (2018)
Effect of minor allele frequency on the number of single nucleotide polymorphisms needed for accurate parentage assignment: A methodology illustrated using Atlantic salmon
Forest M. Dussault et al.
AQUACULTURE RESEARCH (2018)
Identifying patterns of dispersal, connectivity and selection in the sea scallop, Placopecten magellanicus, using RADseq-derived SNPs
Mallory Van Wyngaarden et al.
EVOLUTIONARY APPLICATIONS (2017)
A Unified Characterization of Population Structure and Relatedness
Bruce S. Weir et al.
GENETICS (2017)
Contrasting Patterns of Gene Flow for Amazonian Snakes That Actively Forage and Those That Wait in Ambush
Rafael de Fraga et al.
JOURNAL OF HEREDITY (2017)
Using relatedness networks to infer contemporary dispersal: Application to the endangered mammal Galemys pyrenaicus
Lidia Escoda et al.
MOLECULAR ECOLOGY (2017)
Extensive seed and pollen dispersal and assortative mating in the rain forest tree Entandrophragma cylindricum (Meliaceae) inferred from indirect and direct analyses
Franck Kameni Monthe et al.
MOLECULAR ECOLOGY (2017)
Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage
Stuart C. Willis et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species
Alison G. Nazareno et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Deriving genotypes from RAD-seq short-read data using Stacks
Nicolas C. Rochette et al.
NATURE PROTOCOLS (2017)
A Unified Characterization of Population Structure and Relatedness
Bruce S. Weir et al.
GENETICS (2017)
The majestic canopy-emergent genus Dinizia (Leguminosae: Caesalpinioideae), including a new species endemic to the Brazilian state of Espirito Santo
G. P. Lewis et al.
KEW BULLETIN (2017)
Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering
Richard G. J. Hodel et al.
SCIENTIFIC REPORTS (2017)
How many markers are enough? Factors influencing parentage testing in different livestock populations
E. M. Strucken et al.
JOURNAL OF ANIMAL BREEDING AND GENETICS (2016)
Small but not isolated: a population genetic survey of the tropical tree Cariniana estrellensis (Lecythidaceae) in a highly fragmented habitat
M. C. Guidugli et al.
HEREDITY (2016)
Quantifying the similarity between genes and geography across Alaska's alpine small mammals
L. Lacey Knowles et al.
JOURNAL OF BIOGEOGRAPHY (2016)
Within-group relatedness is correlated with colony-level social structure and reproductive sharing in a social fish
Jennifer K. Hellmann et al.
MOLECULAR ECOLOGY (2016)
Harnessing the power of RADseq for ecological and evolutionary genomics
Kimberly R. Andrews et al.
NATURE REVIEWS GENETICS (2016)
Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences
Huateng Huang et al.
SYSTEMATIC BIOLOGY (2016)
Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
A. Mastretta-Yanes et al.
MOLECULAR ECOLOGY RESOURCES (2015)
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
Deren A. R. Eaton
BIOINFORMATICS (2014)
Connectivity and gene flow among Eastern Tiger Salamander (Ambystoma tigrinum) populations in highly modified anthropogenic landscapes
Valorie R. Titus et al.
CONSERVATION GENETICS (2014)
Patterns of pollen dispersal in a small population of the Canarian endemic palm (Phoenix canariensis)
I. Saro et al.
HEREDITY (2014)
Defining Loci in Restriction-Based Reduced Representation Genomic Data from Nonmodel Species: Sources of Bias and Diagnostics for Optimal Clustering
Daniel C. Ilut et al.
BIOMED RESEARCH INTERNATIONAL (2014)
The effect of RAD allele dropout on the estimation of genetic variation within and between populations
Mathieu Gautier et al.
MOLECULAR ECOLOGY (2013)
Low plant density enhances gene dispersal in the Amazonian understory herb Heliconia acuminata
Marina C. Cortes et al.
MOLECULAR ECOLOGY (2013)
RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling
B. Arnold et al.
MOLECULAR ECOLOGY (2013)
Stacks: an analysis tool set for population genomics
Julian Catchen et al.
MOLECULAR ECOLOGY (2013)
Effects of missing data on species tree estimation under the coalescent
Rasmus Hovmoeller et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)
Changes of effective gene dispersal distances by pollen and seeds across successive life stages in a tropical tree
Dana Gertrud Berens et al.
OIKOS (2013)
Assessing the importance of individual habitat patches as irreplaceable connecting elements: An analysis of simulated and real landscape data
Lidon Rubio et al.
ECOLOGICAL COMPLEXITY (2012)
The pollen dispersal kernel and mating system of an insect-pollinated tropical palm, Oenocarpus bataua
K. Ottewell et al.
HEREDITY (2012)
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
Brant K. Peterson et al.
PLOS ONE (2012)
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
Thibaut Jombart et al.
BIOINFORMATICS (2011)
Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms
J. E. Seeb et al.
MOLECULAR ECOLOGY RESOURCES (2011)
Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout
Paul A. Hohenlohe et al.
MOLECULAR ECOLOGY RESOURCES (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
John W. Davey et al.
NATURE REVIEWS GENETICS (2011)
Taking a tree's perspective on forest fragmentation genetics
Cecile F. E. Bacles et al.
TRENDS IN PLANT SCIENCE (2011)
Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
Julian M. Catchen et al.
G3-GENES GENOMES GENETICS (2011)
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
Laurent Excoffier et al.
MOLECULAR ECOLOGY RESOURCES (2010)
On the restoration of high diversity forests: 30 years of experience in the Brazilian Atlantic Forest
Ricardo R. Rodrigues et al.
BIOLOGICAL CONSERVATION (2009)
What the reasons for no inbreeding and high genetic diversity of the neotropical fig tree Ficus arpazusa ?
Alison Goncalves Nazareno et al.
CONSERVATION GENETICS (2009)
Estimation of the number of SNP genetic markers required for parentage verification
E. Baruch et al.
ANIMAL GENETICS (2008)
adegenet:: a R package for the multivariate analysis of genetic markers
Thibaut Jombart
BIOINFORMATICS (2008)
Patterns of pollen and seed dispersal in a small, fragmented population of the wind-pollinated tree Araucaria angustifolia in southern Brazil
J. V. M. Bittencourt et al.
HEREDITY (2007)
The power of single-nucleotide polymorphisms for large-scale parentage inference
EC Anderson et al.
GENETICS (2006)
Effect of gene flow on spatial genetic structure in the riparian canopy tree Cercidiphyllum japonicum revealed by microsatellite analysis
T Sato et al.
HEREDITY (2006)
Historical and contemporary mating patterns in remnant populations of the forest tree Fraxinus excelsior L.
CFE Bacles et al.
EVOLUTION (2005)
Gene flow and fine-scale genetic structure in a wind-pollinated tree species Quercus lobata (Fagaceaee)
C Dutech et al.
AMERICAN JOURNAL OF BOTANY (2005)
Most species are not driven to extinction before genetic factors impact them
D Spielman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
The power and promise of population genomics: From genotyping to genome typing
G Luikart et al.
NATURE REVIEWS GENETICS (2003)
SPAGEDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels
OJ Hardy et al.
MOLECULAR ECOLOGY NOTES (2002)
Share Paper
