4.7 Article

Natural Hybrid Origin of the Controversial Species Clematis x pinnata (Ranunculaceae) Based on Multidisciplinary Evidence

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Natural hybridization between two butterfly bushes in Tibet: dominance of F1 hybrids promotes strong reproductive isolation

Rongli Liao et al.

Summary: This study investigates hybridization of Buddleja plants in disturbed habitats, finding that most hybrids are F(1)s and gene flow is limited by mainly F-1 hybrids, maintaining species boundaries. Evidence suggests B. crispa as the maternal parent in one population and predicts a unidirectional hybridization pattern in another.

BMC PLANT BIOLOGY (2021)

Article Biochemistry & Molecular Biology

An updated phylogenetic and biogeographic analysis based on genome skimming data reveals convergent evolution of shrubby habit in Clematis in the Pliocene and Pleistocene

Jian He et al.

Summary: The study reconstructed the evolutionary history of Clematis using plastome and nuclear ribosomal DNA sequences, revealing that the shrubby habit evolved independently in four lineages of Clematis in Asia and emerged since the very beginning of the Pliocene. Asian monsoon variation in the Pliocene and glacial period fluctuation in the Pleistocene were identified as driving forces for the origin and diversification of shrubby Clematis in Central Asia and adjacent dry areas.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2021)

Article Evolutionary Biology

Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l.

Diego F. Morales-Briones et al.

Summary: This study investigates gene tree discordance in the plant family Amaranthaceae s.l. using a combination of methods, revealing potential ancient and rapid lineage diversification in the family leading to unresolved conflicts. The research highlights the challenges of identifying sources of gene tree discordance, particularly with phylogenetic network methods, and underscores the importance of thoroughly testing for multiple sources of conflict in phylogenomic analyses.

SYSTEMATIC BIOLOGY (2021)

Article Agriculture, Dairy & Animal Science

Genetic structure and admixture in sheep from terminal breeds in the United States

K. M. Davenport et al.

ANIMAL GENETICS (2020)

Article Biochemistry & Molecular Biology

Phylogenomics recovers monophyly and early Tertiary diversification of Dipteronia (Sapindaceae)

Yu Feng et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Article Biochemical Research Methods

PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes

Xiao-Jian Qu et al.

PLANT METHODS (2019)

Article Evolutionary Biology

An invariants-based method for efficient identification of hybrid species from large-scale genomic data

Laura S. Kubatko et al.

BMC EVOLUTIONARY BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Phylogenomics Reveals an Ancient Hybrid Origin of the Persian Walnut

Bo-Wen Zhang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2019)

Article Biochemistry & Molecular Biology

Hybridization preceded radiation in diploid wheats

Stella Huynh et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Article Evolutionary Biology

RNAseq-based phylogenetic reconstruction of Taxaceae and Cephalotaxaceae

Aasim Majeed et al.

CLADISTICS (2019)

Article Plant Sciences

Origin of angiosperms and the puzzle of the Jurassic gap

Hong-Tao Li et al.

NATURE PLANTS (2019)

Article Plant Sciences

Phylogenomic analyses reveal extensive gene flow within the magic flowers (Achimenes)

Wade R. Roberts et al.

AMERICAN JOURNAL OF BOTANY (2018)

Article Biotechnology & Applied Microbiology

Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies

Dorcus Kholofelo Malomane et al.

BMC GENOMICS (2018)

Article Biotechnology & Applied Microbiology

TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees

Uyen Mai et al.

BMC GENOMICS (2018)

Article Plant Sciences

A2-type cyclin is required for the asymmetric entry division in rice stomatal development

Xiaoxiao Qu et al.

JOURNAL OF EXPERIMENTAL BOTANY (2018)

Article Evolutionary Biology

HyDe: A Python Package for Genome-Scale Hybridization Detection

Paul D. Blischak et al.

SYSTEMATIC BIOLOGY (2018)

Article Evolutionary Biology

Inferring Phylogenetic Networks Using PhyloNet

Dingqiao Wen et al.

SYSTEMATIC BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Independent homoploid hybrid speciation events in the Macaronesian endemic genus Argyranthemum

Oliver W. White et al.

MOLECULAR ECOLOGY (2018)

Article Plant Sciences

Hybridization in Plants: Old Ideas, New Techniques

Benjamin E. Goulet et al.

PLANT PHYSIOLOGY (2017)

Editorial Material Ecology

Is homoploid hybrid speciation that rare? An empiricist's view

G. Nieto Feliner et al.

HEREDITY (2017)

Article Plant Sciences

Molecular Evidence for Natural Hybridization between Cotoneaster dielsianus and C-glaucophyllus

Mingwan Li et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Plant Sciences

Sensitive phylogenetics of Clematis and its position in Ranunculaceae

Samuli Lehtonen et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2016)

Article Biotechnology & Applied Microbiology

A maximum pseudo-likelihood approach for phylogenetic networks

Yun Yu et al.

BMC GENOMICS (2015)

Article Biochemistry & Molecular Biology

How just a few makes a lot: Speciation via reticulation and apomixis on example of European brambles (Rubus subgen. Rubus, Rosaceae)

Michal Sochor et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)

Article Genetics & Heredity

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

Hideki Nishikawa et al.

NATURE GENETICS (2015)

Article Plant Sciences

The geography of hybrid speciation in plants

Joachim W. Kadereit

TAXON (2015)

Article Plant Sciences

Palynology, cytology, and molecular systematics of Anemone section Begoniifolia (Ranunculaceae)

Yu Zhang et al.

PLANT SYSTEMATICS AND EVOLUTION (2015)

Review Plant Sciences

THE ROLE OF HOMOPLOID HYBRIDIZATION IN EVOLUTION: A CENTURY OF STUDIES SYNTHESIZING GENETICS AND ECOLOGY

Sarah B. Yakimowski et al.

AMERICAN JOURNAL OF BOTANY (2014)

Article Biochemical Research Methods

ASTRAL: genome-scale coalescent-based species tree estimation

S. Mirarab et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Ecology

glUV: a global UV-B radiation data set for macroecological studies

Michael Beckmann et al.

METHODS IN ECOLOGY AND EVOLUTION (2014)

Review Ecology

Hybridization and speciation

R. Abbott et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2013)

Article Biochemical Research Methods

CD-HIT: accelerated for clustering the next-generation sequencing data

Limin Fu et al.

BIOINFORMATICS (2012)

Article Genetics & Heredity

Ancient Admixture in Human History

Nick Patterson et al.

GENETICS (2012)

Article Ecology

Measuring ecological niche overlap from occurrence and spatial environmental data

Olivier Broennimann et al.

GLOBAL ECOLOGY AND BIOGEOGRAPHY (2012)

Article Plant Sciences

Variation of pollen morphology, and its implications in the phylogeny of Clematis (Ranunculaceae)

Lei Xie et al.

PLANT SYSTEMATICS AND EVOLUTION (2012)

Article Multidisciplinary Sciences

Transcriptional Analysis of Arabidopsis thaliana Response to Lima Bean Volatiles

Sufang Zhang et al.

PLOS ONE (2012)

Article Biochemical Research Methods

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

Marcus Lechner et al.

BMC BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Biodiversity Conservation

ENMTools: a toolbox for comparative studies of environmental niche models

Dan L. Warren et al.

ECOGRAPHY (2010)

Article Multidisciplinary Sciences

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

Michael J. Moore et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

The frequency of polyploid speciation in vascular plants

Troy E. Wood et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemical Research Methods

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

Stephen A. Smith et al.

BIOINFORMATICS (2008)

Article Plant Sciences

A revision of Clematis sect. Tubulosae (Ranunculaceae)

Wang Wen-Tsai et al.

ACTA PHYTOTAXONOMICA SINICA (2007)

Review Multidisciplinary Sciences

Hybrid speciation

James Mallet

NATURE (2007)

Article Biochemical Research Methods

Estimation of nuclear DNA content in plants using flow cytometry

Jaroslav Dolezel et al.

NATURE PROTOCOLS (2007)

Article Plant Sciences

Notes on the genus Clematis (Ranunculaceae) (VI)

WT Wang

ACTA PHYTOTAXONOMICA SINICA (2006)

Article Biochemistry & Molecular Biology

Application of phylogenetic networks in evolutionary studies

DH Huson et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Meteorology & Atmospheric Sciences

Very high resolution interpolated climate surfaces for global land areas

RJ Hijmans et al.

INTERNATIONAL JOURNAL OF CLIMATOLOGY (2005)

Article Plant Sciences

Notes on the publication date of four names of Lauraceae from China

Y Yang et al.

ACTA PHYTOTAXONOMICA SINICA (2005)

Review Genetics & Heredity

The advantages and disadvantages of being polyploid

L Comai

NATURE REVIEWS GENETICS (2005)

Review Evolutionary Biology

A review of long-branch attraction

J Bergsten

CLADISTICS (2005)

Article Biochemistry & Molecular Biology

MAFFT version 5: improvement in accuracy of multiple sequence alignment

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Phylogenetic analysis under reticulate evolution

SZ Xu

MOLECULAR BIOLOGY AND EVOLUTION (2000)