4.7 Article

QTL-Seq Analysis for Identification of Resistance Loci to Bacterial Canker in Tomato

Related references

Note: Only part of the references are listed.
Article Agronomy

SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice

Rao Yuchun et al.

Summary: Lesion mimic mutants spontaneously produce disease spots in the absence of stresses, shedding light on programmed cell death and defense responses in plants. The rice spotted leaf 36 (spl36) mutant displays enhanced resistance to bacterial pathogens and affects plant growth by upregulating defense-related genes. SPL36 is a receptor-like protein kinase that negatively regulates salt-stress response and disease resistance by affecting the expression of defense- and stress-related genes.
Article Biotechnology & Applied Microbiology

Comparative transcriptome analysis of resistant and cultivated tomato lines in response to Clavibacter michiganensis subsp. michiganensis

Huseyin Basim et al.

Summary: The transcriptome responses of Cmm-resistant and -susceptible tomato lines were compared after inoculation with Clavibacter michiganensis subsp. michiganensis. Differentially expressed genes were identified, with susceptible lines showing more genes involved in biological processes and molecular functions, while resistant lines exhibited distinct defense response and stress-related genes upon inoculation. This study provides insights for molecular breeding studies aiming to control the pathogen in tomato.

GENOMICS (2021)

Article Agriculture, Multidisciplinary

Transcriptional Changes of Plant Defense-Related Genes in Response to Clavibacter Infection in Pepper and Tomato

In Sun Hwang et al.

PLANT PATHOLOGY JOURNAL (2020)

Article Plant Sciences

The Gossypium hirsutum TIR-NBS-LRR gene GhDSC1 mediates resistance against Verticillium wilt

Ting-Gang Li et al.

MOLECULAR PLANT PATHOLOGY (2019)

Article Mathematical & Computational Biology

QTL-BSA: A Bulked Segregant Analysis and Visualization Pipeline for QTL-seq

Sanling Wu et al.

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES (2019)

Article Biochemistry & Molecular Biology

Functional Characterization of Two Cellulase Genes in the Gram-Positive Pathogenic Bacterium Clavibacter michiganensis for Wilting in Tomato

In Sun Hwang et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2019)

Review Plant Sciences

Receptor-Like Cytoplasmic Kinases: Central Players in Plant Receptor Kinase-Mediated Signaling

Xiangxiu Liang et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 69 (2018)

Article Agronomy

Fine mapping of a major QTL controlling early flowering in tomato using QTL-seq

Eaknarin Ruangrak et al.

CANADIAN JOURNAL OF PLANT SCIENCE (2018)

Review Plant Sciences

Breeding for Resistance to Tomato Bacterial Diseases in China: Challenges and Prospects

Wang Yuqing et al.

HORTICULTURAL PLANT JOURNAL (2018)

Article Biochemistry & Molecular Biology

VCFR: a package to manipulate and visualize variant call format data in R

Brian J. Knaus et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Review Biochemistry & Molecular Biology

Receptor Kinases in Plant-Pathogen Interactions: More Than Pattern Recognition

Dingzhong Tang et al.

PLANT CELL (2017)

Review Agronomy

Past and Future Use of Wild Relatives in Crop Breeding

Hannes Dempewolf et al.

CROP SCIENCE (2017)

Review Biotechnology & Applied Microbiology

Bulked sample analysis in genetics, genomics and crop improvement

Cheng Zou et al.

PLANT BIOTECHNOLOGY JOURNAL (2016)

Article Agriculture, Multidisciplinary

Bacterial canker of tomatoes — histological characterization of cultivar resistance and seed transmission

Brit Stüwe et al.

Journal of Plant Diseases and Protection (2016)

Article Biochemistry & Molecular Biology

Natural variation of rice blast resistance gene Pi-d2

J. B. Li et al.

GENETICS AND MOLECULAR RESEARCH (2015)

Article Agronomy

Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq

Eudald Illa-Berenguer et al.

THEORETICAL AND APPLIED GENETICS (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato et al.

NATURE (2012)

Article Biochemical Research Methods

Gene Expression Analysis during Interaction of Tomato and Related Wild Species with Clavibacter michiganensis subsp. michiganensis

Jose Pablo Lara-Avila et al.

PLANT MOLECULAR BIOLOGY REPORTER (2012)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Review Immunology

Plant NBS-LRR proteins in pathogen sensing and host defense

Brody J. DeYoung et al.

NATURE IMMUNOLOGY (2006)

Review Plant Sciences

Resistance proteins: molecular switches of plant defence

Frank L. W. Takken et al.

CURRENT OPINION IN PLANT BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Proteomic analysis of resistance mediated by Rcm 2.0 and Rcm 5.1, two loci controlling resistance to bacterial canker of tomato

GL Coaker et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2004)

Article Biochemistry & Molecular Biology

The tomato R gene products I-2 and Mi-1 are functional ATP binding proteins with ATPase activity

WIL Tameling et al.

PLANT CELL (2002)