Related references
Note: Only part of the references are listed.The Effects of Soil Depth on the Structure of Microbial Communities in Agricultural Soils in Iowa (United States)
Jingjie Hao et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2021)
Toward a Generalizable Framework of Disturbance Ecology Through Crowdsourced Science
Emily B. Graham et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2021)
Uncovering the hillslope scale flow and transport dynamics in an experimental hydrologic system
Minseok Kim et al.
HYDROLOGICAL PROCESSES (2021)
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
I-Min A. Chen et al.
NUCLEIC ACIDS RESEARCH (2021)
Genomes OnLine Database (GOLD) v.8: overview and updates
Supratim Mukherjee et al.
NUCLEIC ACIDS RESEARCH (2021)
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
Diego Darriba et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome
William C. Nelson et al.
PLOS ONE (2020)
Flow Cytometry Combined With Single Cell Sorting to Study Heterogeneous Germination of Bacillus Spores Under High Pressure
Yifan Zhang et al.
FRONTIERS IN MICROBIOLOGY (2020)
Stochastic Dispersal Rather Than Deterministic Selection Explains the Spatio-Temporal Distribution of Soil Bacteria in a Temperate Grassland
Tim Richter-Heitmann et al.
FRONTIERS IN MICROBIOLOGY (2020)
Assessing Microbial Community Patterns During Incipient Soil Formation From Basalt
Aditi Sengupta et al.
JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2019)
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Alexey M. Kozlov et al.
BIOINFORMATICS (2019)
Rapid Microbial Dynamics in Response to an Induced Wetting Event in Antarctic Dry Valley Soils
Thomas D. Niederberger et al.
FRONTIERS IN MICROBIOLOGY (2019)
Ecosystem-bedrock interaction changes nutrient compartmentalization during early oxidative weathering
Dragos G. Zaharescu et al.
SCIENTIFIC REPORTS (2019)
Reconciling Negative Soil CO2 Fluxes: Insights from a Large-Scale Experimental Hillslope
Alejandro Cueva et al.
SOIL SYSTEMS (2019)
Changes in nitrogen-cycling microbial communities with depth in temperate and subtropical forest soils
Yuqian Tang et al.
APPLIED SOIL ECOLOGY (2018)
Depth matters: effects of precipitation regime on soil microbial activity upon rewetting of a plant-soil system
Ilonka C. Engelhardt et al.
ISME JOURNAL (2018)
Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession
Rudiger Ortiz-Alvarez et al.
ISME JOURNAL (2018)
Resource Availability Drives Responses of Soil Microbial Communities to Short-term Precipitation and Nitrogen Addition in a Desert Shrubland
Weiwei She et al.
FRONTIERS IN MICROBIOLOGY (2018)
Function and functional redundancy in microbial systems
Stilianos Louca et al.
NATURE ECOLOGY & EVOLUTION (2018)
Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes
Joshua P. Schimel
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 49 (2018)
High taxonomic variability despite stable functional structure across microbial communities
Stilianos Louca et al.
NATURE ECOLOGY & EVOLUTION (2017)
Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes
Emily B. Graham et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
Jizhong Zhou et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2017)
Dispersal-Based Microbial Community Assembly Decreases Biogeochemical Function
Emily B. Graham et al.
PROCESSES (2017)
Microbial community response to hydration-desiccation cycles in desert soil
Adam Stovicek et al.
SCIENTIFIC REPORTS (2017)
Hydropedology: Interactions between pedologic and hydrologic processes across spatiotemporal scales
Yu-jun Ma et al.
EARTH-SCIENCE REVIEWS (2017)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Parent material and pedogenic thresholds: observations and a simple model
Peter Vitousek et al.
BIOGEOCHEMISTRY (2016)
Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier
Thomas Rime et al.
ISME JOURNAL (2016)
Decoupling function and taxonomy in the global ocean microbiome
Stilianos Louca et al.
SCIENCE (2016)
Processes and Modeling of Initial Soil and Landscape Development: A Review
Thomas Maurer et al.
VADOSE ZONE JOURNAL (2016)
Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism
Emily B. Graham et al.
FRONTIERS IN MICROBIOLOGY (2016)
Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
Emily B. Graham et al.
FRONTIERS IN MICROBIOLOGY (2016)
The Landscape Evolution Observatory: A large-scale controllable infrastructure to study coupled Earth-surface processes
Luke A. Pangle et al.
GEOMORPHOLOGY (2015)
Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession
Francisco Dini-Andreote et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Estimating and mapping ecological processes influencing microbial community assembly
James C. Stegen et al.
FRONTIERS IN MICROBIOLOGY (2015)
Microbial community dynamics in the forefield of glaciers
James A. Bradley et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
Quantifying community assembly processes and identifying features that impose them
James C. Stegen et al.
ISME JOURNAL (2013)
Changes in assembly processes in soil bacterial communities following a wildfire disturbance
Scott Ferrenberg et al.
ISME JOURNAL (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Colonization patterns of soil microbial communities in the Atacama Desert
Alexander Crits-Christoph et al.
MICROBIOME (2013)
Micro-scale determinants of bacterial diversity in soil
Michiel Vos et al.
FEMS MICROBIOLOGY REVIEWS (2013)
Soil microbial community response to drying and rewetting stress: does historical precipitation regime matter?
Sarah E. Evans et al.
BIOGEOCHEMISTRY (2012)
Stochastic and deterministic assembly processes in subsurface microbial communities
James C. Stegen et al.
ISME JOURNAL (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil
Kathryn G. Eilers et al.
SOIL BIOLOGY & BIOCHEMISTRY (2012)
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Brian J. Haas et al.
GENOME RESEARCH (2011)
Bacterial community assembly based on functional genes rather than species
Catherine Burke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers
Hector F. Castro et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
PyNAST: a flexible tool for aligning sequences to a template alignment
J. Gregory Caporaso et al.
BIOINFORMATICS (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Hydration-controlled bacterial motility and dispersal on surfaces
Arnaud Dechesne et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Bacteria in Weathered Basaltic Glass, Iceland
Charles S. Cockell et al.
GEOMICROBIOLOGY JOURNAL (2009)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Influence of drying-rewetting frequency on soil bacterial community structure
N Fierer et al.
MICROBIAL ECOLOGY (2003)
Influence of dry-wet cycles on the interrelationship between aggregate, particulate organic matter, and microbial community dynamics
K Denef et al.
SOIL BIOLOGY & BIOCHEMISTRY (2001)
TIGRFAMs: a protein family resource for the functional identification of proteins
DH Haft et al.
NUCLEIC ACIDS RESEARCH (2001)
Release of intracellular solutes by four soil bacteria exposed to dilution stress
LJ Halverson et al.
SOIL SCIENCE SOCIETY OF AMERICA JOURNAL (2000)
Share Paper
