4.8 Article

Systematic investigation of the link between enzyme catalysis and cold adaptation

Journal

ELIFE
Volume 11, Issue -, Pages -

Publisher

eLIFE SCIENCES PUBL LTD
DOI: 10.7554/eLife.72884

Keywords

enzyme rate; cold adaptation; evolutionary biochemistry; None

Categories

Funding

  1. National Science Foundation Graduate Research Fellowship
  2. National Science Foundation [MCB-1714723]
  3. Chemistry, Engineering and Medicine for Human Health, Stanford University Chemistry-Biology Interface Training Program

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The study aimed to test whether rate enhancement is a major adaptive trait of enzymes to cold temperature. The results showed that temperature has a weaker influence on enzyme rate constants compared to stability, indicating that other evolutionary forces are responsible for the majority of enzymatic rate constant variation.
Cold temperature is prevalent across the biosphere and slows the rates of chemical reactions. Increased catalysis has been predicted to be a dominant adaptive trait of enzymes to reduced temperature, and this expectation has informed physical models for enzyme catalysis and influenced bioprospecting strategies. To systematically test rate enhancement as an adaptive trait to cold, we paired kinetic constants of 2223 enzyme reactions with their organism's optimal growth temperature (T-Growth) and analyzed trends of rate constants as a function of T-Growth. These data do not support a general increase in rate enhancement in cold adaptation. In the model enzyme ketosteroid isomerase (KSI), there is prior evidence for temperature adaptation from a change in an active site residue that results in a tradeoff between activity and stability. Nevertheless, we found that little of the rate constant variation for 20 KSI variants was accounted for by T-Growth. In contrast, and consistent with prior expectations, we observed a correlation between stability and T-Growth across 433 proteins. These results suggest that temperature exerts a weaker selection pressure on enzyme rate constants than stability and that evolutionary forces other than temperature are responsible for the majority of enzymatic rate constant variation.

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