4.6 Article

Experiment level curation of transcriptional regulatory interactions in neurodevelopment

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors

Chenchen Feng et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Multidisciplinary Sciences

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Jill E. Moore et al.

NATURE (2020)

Article Biochemistry & Molecular Biology

Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells

Emily R. Miraldi et al.

GENOME RESEARCH (2019)

Article Biochemistry & Molecular Biology

Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders

Jocelynn R. Pearl et al.

CELL SYSTEMS (2019)

Article Biochemistry & Molecular Biology

Benchmark and integration of resources for the estimation of human transcription factor activities

Luz Garcia-Alonso et al.

GENOME RESEARCH (2019)

Article Biochemistry & Molecular Biology

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens

Molly Gasperini et al.

Article Biochemistry & Molecular Biology

TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions

Heonjong Han et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Biochemistry & Molecular Biology

The Human Transcription Factors

Samuel A. Lambert et al.

Article Biochemistry & Molecular Biology

Transcriptional regulatory networks underlying gene expression changes in Huntington's disease

Seth A. Ament et al.

MOLECULAR SYSTEMS BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Global landscape of mouse and human cytokine transcriptional regulation

Sebastian Carrasco Pro et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Chromatin Remodeling BAF155 Subunit Regulates the Genesis of Basal Progenitors in Developing Cortex

Ramanathan Narayanan et al.

ISCIENCE (2018)

Article Biochemistry & Molecular Biology

Database Resources of the National Center for Biotechnology

Richa Agarwala et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Cell Biology

Understanding Tissue-Specific Gene Regulation

Abhijeet Rajendra Sonawane et al.

CELL REPORTS (2017)

Article Anatomy & Morphology

Fgf15 regulates thalamic development by controlling the expression of proneural genes

Almudena Martinez-Ferre et al.

BRAIN STRUCTURE & FUNCTION (2016)

Article Biochemistry & Molecular Biology

ORegAnno 3.0: a community-driven resource for curated regulatory annotation

Robert Lesurf et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Mathematical & Computational Biology

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

Alexander D. Diehl et al.

JOURNAL OF BIOMEDICAL SEMANTICS (2016)

Article Multidisciplinary Sciences

TRRUST: a reference database of human transcriptional regulatory interactions

Heonjong Han et al.

SCIENTIFIC REPORTS (2015)

Article Mathematical & Computational Biology

CLO: The cell line ontology

Sirarat Sarntivijai et al.

JOURNAL OF BIOMEDICAL SEMANTICS (2014)

Letter Genetics & Heredity

SFARI Gene 2.0: a community-driven knowledgebase for the autism spectrum disorders (ASDs)

Brett S. Abrahams et al.

MOLECULAR AUTISM (2013)

Article Biochemical Research Methods

Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data

Anton Zoubarev et al.

BIOINFORMATICS (2012)

Article Biotechnology & Applied Microbiology

HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions

Luiz A. Bovolenta et al.

BMC GENOMICS (2012)

Article Biotechnology & Applied Microbiology

Uberon, an integrative multi-species anatomy ontology

Christopher J. Mungall et al.

GENOME BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

The Transcription Factor Encyclopedia

Dimas Yusuf et al.

GENOME BIOLOGY (2012)

Review Developmental Biology

The Role of Pax6 in Forebrain Development

Petrina A. Georgala et al.

DEVELOPMENTAL NEUROBIOLOGY (2011)

Article Genetics & Heredity

Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes

Erik Engelen et al.

NATURE GENETICS (2011)

Article Genetics & Heredity

Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations

Brian J. O'Roak et al.

NATURE GENETICS (2011)

Article Biochemistry & Molecular Biology

The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources

Marion Gremse et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

The Impact of Multifunctional Genes on Guilt by Association Analysis

Jesse Gillis et al.

PLOS ONE (2011)

Article Statistics & Probability

ggplot2

Hadley Wickham

WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL STATISTICS (2011)

Article Biochemical Research Methods

Modeling sample variables with an Experimental Factor Ontology

James Malone et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Islet β-Cell-Specific MafA Transcription Requires the 5'-Flanking Conserved Region 3 Control Domain

Jeffrey C. Raum et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

ORegAnno: an open-access community-driven resource for regulatory annotation

Obi L. Griffith et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Entrez Gene: gene-centered information at NCBI

D Maglott et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

The Gene Ontology (GO) database and informatics resource

MA Harris et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)