Related references
Note: Only part of the references are listed.Changing Disparities in Coronavirus Disease 2019 (COVID-19) Burden in the Ethnically Homogeneous Population of Hong Kong Through Pandemic Waves: An Observational Study
Bingyi Yang et al.
CLINICAL INFECTIOUS DISEASES (2021)
Nosocomial outbreak caused by the SARS-CoV-2 Delta variant in a highly vaccinated population, Israel, July 2021
Pnina Shitrit et al.
EUROSURVEILLANCE (2021)
Effective control of SARS-CoV-2 transmission in Wanzhou, China
Qiuling Shi et al.
NATURE MEDICINE (2021)
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
Louis du Plessis et al.
SCIENCE (2021)
Genomic epidemiology of SARS-CoV-2 reveals multiple lineages and early spread of SARS-CoV-2 infections in Lombardy, Italy
Claudia Alteri et al.
NATURE COMMUNICATIONS (2021)
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland
Ana da Silva Filipe et al.
NATURE MICROBIOLOGY (2021)
Navigating from SARS-CoV-2 elimination to endemicity in Australia, Hong Kong, New Zealand, and Singapore
Chuan De Foo et al.
LANCET (2021)
SARS-CoV-2 evolution during treatment of chronic infection
Steven A. Kemp et al.
NATURE (2021)
Comment on Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2
Michael A. Martin et al.
SCIENCE TRANSLATIONAL MEDICINE (2021)
SARS-CoV-2 within-host diversity and transmission
Katrina A. Lythgoe et al.
SCIENCE (2021)
Genomic epidemiology of the early stages of the SARS-CoV-2 outbreak in Russia
Andrey B. Komissarov et al.
NATURE COMMUNICATIONS (2021)
Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients
Yanqun Wang et al.
GENOME MEDICINE (2021)
Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck
Katarina M. Braun et al.
PLOS PATHOGENS (2021)
A global panel database of pandemic policies (Oxford COVID-19 Government Response Tracker)
Thomas Hale et al.
NATURE HUMAN BEHAVIOUR (2021)
Community psychological and behavioural responses to coronavirus disease 2019 over one year of the pandemic in 2020 in Hong Kong
Qiuyan Liao et al.
SCIENTIFIC REPORTS (2021)
Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States
Nicole L. Washington et al.
CELL (2021)
Nowcasting epidemics of novel pathogens: lessons from COVID-19
Joseph T. Wu et al.
NATURE MEDICINE (2021)
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
Nuno R. Faria et al.
SCIENCE (2021)
Untangling introductions and persistence in COVID-19 resurgence in Europe
Philippe Lemey et al.
NATURE (2021)
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
Emma B. Hodcroft et al.
NATURE (2021)
Assessing Community Vulnerability over 3 Waves of COVID-19 Pandemic, Hong Kong, China
Qiuyan Liao et al.
EMERGING INFECTIOUS DISEASES (2021)
Introduction of ORF3a-Q57H SARS-CoV-2 Variant Causing Fourth Epidemic Wave of COVID-19, Hong Kong, China
Daniel K. W. Chu et al.
EMERGING INFECTIOUS DISEASES (2021)
Incubation period of 2019 novel coronavirus (2019-nCoV) infections among travellers from Wuhan, China, 20-28 January 2020
Jantien A. Backer et al.
EUROSURVEILLANCE (2020)
An interactive web-based dashboard to track COVID-19 in real time
Ensheng Dong et al.
LANCET INFECTIOUS DISEASES (2020)
A new coronavirus associated with human respiratory disease in China
Fan Wu et al.
NATURE (2020)
Estimating the infection and case fatality ratio for coronavirus disease (COVID-19) using age-adjusted data from the outbreak on the Diamond Princess cruise ship, February 2020
Timothy W Russell et al.
Eurosurveillance (2020)
Estimating the asymptomatic proportion of coronavirus disease 2019 (COVID-19) cases on board the Diamond Princess cruise ship, Yokohama, Japan, 2020
Kenji Mizumoto et al.
EUROSURVEILLANCE (2020)
Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing
Luca Ferretti et al.
SCIENCE (2020)
First-wave COVID-19 transmissibility and severity in China outside Hubei after control measures, and second-wave scenario planning: a modelling impact assessment
Kathy Leung et al.
LANCET (2020)
Infection of dogs with SARS-CoV-2
Thomas H. C. Sit et al.
NATURE (2020)
Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China
Joseph T. Wu et al.
NATURE MEDICINE (2020)
From a Sprint to a Marathon in Hong Kong
Gabriel M. Leung et al.
NEW ENGLAND JOURNAL OF MEDICINE (2020)
Impact assessment of non-pharmaceutical interventions against coronavirus disease 2019 and influenza in Hong Kong: an observational study
Benjamin J. Cowling et al.
LANCET PUBLIC HEALTH (2020)
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
Andrew Rambaut et al.
NATURE MICROBIOLOGY (2020)
Estimates of the severity of coronavirus disease 2019: a model-based analysis
Robert Verity et al.
LANCET INFECTIOUS DISEASES (2020)
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Darlan S. Candido et al.
SCIENCE (2020)
Clustering and superspreading potential of SARS-CoV-2 infections in Hong Kong
Dillon C. Adam et al.
NATURE MEDICINE (2020)
Temporal signal and the phylodynamic threshold of SARS-CoV-2
Sebastian Duchene et al.
VIRUS EVOLUTION (2020)
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand
Jemma L. Geoghegan et al.
NATURE COMMUNICATIONS (2020)
Elimination could be the optimal response strategy for covid-19 and other emerging pandemic diseases
Michael G. Baker et al.
BMJ-BRITISH MEDICAL JOURNAL (2020)
Practical considerations for measuring the effective reproductive number, Rt
Katelyn M. Gostic et al.
PLOS COMPUTATIONAL BIOLOGY (2020)
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Improved inference of time-varying reproduction numbers during infectious disease outbreaks
R. N. Thompson et al.
EPIDEMICS (2019)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus
Ashley Sobel Leonard et al.
JOURNAL OF VIROLOGY (2017)
Monitoring the fitness of antiviral-resistant influenza strains during an epidemic: a mathematical modelling study
Kathy Leung et al.
LANCET INFECTIOUS DISEASES (2017)
Fast Dating Using Least-Squares Criteria and Algorithms
Thu-Hien To et al.
SYSTEMATIC BIOLOGY (2016)
VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research
Zhongwu Lai et al.
NUCLEIC ACIDS RESEARCH (2016)
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
Andrew Rambaut et al.
VIRUS EVOLUTION (2016)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
Simon Y. W. Ho et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)
Tanja Stadler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
Andreas Wilm et al.
NUCLEIC ACIDS RESEARCH (2012)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Relaxed phylogenetics and dating with confidence
Alexei J. Drummond et al.
PLOS BIOLOGY (2006)
Bayesian coalescent inference of past population dynamics from molecular sequences
AJ Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)