Related references
Note: Only part of the references are listed.Newly identified genes contribute to vanillin tolerance inSaccharomyces cerevisiae
Zhenzhen Liang et al.
MICROBIAL BIOTECHNOLOGY (2021)
Global Transcriptional Regulators Fine-Tune the Translational and Metabolic Efficiency for Optimal Growth of Escherichia coli
Mahesh S. Iyer et al.
MSYSTEMS (2021)
Highly accurate protein structure prediction with AlphaFold
John Jumper et al.
NATURE (2021)
Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity
Samuel B. Yoshua et al.
NUCLEIC ACIDS RESEARCH (2021)
The Context-Dependent Influence of Promoter Sequence Motifs on Transcription Initiation Kinetics and Regulation
Drake Jensen et al.
JOURNAL OF BACTERIOLOGY (2021)
Adaptive laboratory evolution of Escherichia coli under acid stress
Bin Du et al.
MICROBIOLOGY-SGM (2020)
A deep learning architecture for metabolic pathway prediction
Mayank Baranwal et al.
BIOINFORMATICS (2020)
Protein-based biorefining driven by nitrogen-responsive transcriptional machinery
Lianjie Ma et al.
BIOTECHNOLOGY FOR BIOFUELS (2020)
Improved protein structure prediction using potentials from deep learning
Andrew W. Senior et al.
NATURE (2020)
Lysine acetylation of the housekeeping sigma factor enhances the activity of the RNA polymerase holoenzyme
Ji-Eun Kim et al.
NUCLEIC ACIDS RESEARCH (2020)
Bacterial Enhancer Binding Proteins-AAA+ Proteins in Transcription Activation
Forson Gao et al.
BIOMOLECULES (2020)
6 Expression of RcHSP70, heat shock protein 70 gene from Chinese rose, enhances host resistance to abiotic stresses
Changhua Jiang et al.
SCIENTIFIC REPORTS (2020)
High-Resolution Scanning of Optimal Biosensor Reporter Promoters in Yeast
Francesca Ambri et al.
ACS SYNTHETIC BIOLOGY (2020)
Enhancing the tolerance of Clostridium saccharoperbutylacetonicum to lignocellulosic-biomass-derived inhibitors for efficient biobutanol production by overexpressing efflux pumps genes from Pseudomonas putida
Pablo Jimenez-Bonilla et al.
BIORESOURCE TECHNOLOGY (2020)
Reverse engineering of fatty acid-tolerant Escherichia coli identifies design strategies for robust microbial cell factories
Yingxi Chen et al.
METABOLIC ENGINEERING (2020)
Structural basis of bacterial σ28-mediated transcription reveals roles of theRNApolymerase zinc-binding domain
Wei Shi et al.
EMBO JOURNAL (2020)
Global regulator engineering enhances bioelectricity generation in Pseudomonas aeruginosa-inoculated MFCs
Jianmei Luo et al.
BIOSENSORS & BIOELECTRONICS (2020)
A quantitative method for proteome reallocation using minimal regulatory interventions
Gustavo Lastiri-Pancardo et al.
NATURE CHEMICAL BIOLOGY (2020)
Engineering regulatory networks for complex phenotypes in E. coli
Rongming Liu et al.
NATURE COMMUNICATIONS (2020)
Rewiring of growth-dependent transcription regulation by a point mutation in region 1.1 of the housekeeping σ factor
Philipp Pletnev et al.
NUCLEIC ACIDS RESEARCH (2020)
De novo design of an intercellular signaling toolbox for multi-channel cell-cell communication and biological computation
Pei Du et al.
NATURE COMMUNICATIONS (2020)
Design, Evolution, and Characterization of a Xylose Biosensor in Escherichia coli Using the XylR/xylO System with an Expanded Operating Range
Rui-Qi Tang et al.
ACS SYNTHETIC BIOLOGY (2020)
A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition
Qing Zhang et al.
MSYSTEMS (2020)
Engineering prokaryotic regulator IrrE to enhance stress tolerance in budding yeast
Li Wang et al.
BIOTECHNOLOGY FOR BIOFUELS (2020)
Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
Jan Zrimec et al.
NATURE COMMUNICATIONS (2020)
Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically Encoded Multiplexed Reporter Assay in Escherichia coli
Guillaume Urtecho et al.
BIOCHEMISTRY (2019)
Engineered sigma factors increase full-length antibody expression in Escherichia coli
Rebekah McKenna et al.
METABOLIC ENGINEERING (2019)
Structural basis of ECF-σ-factor-dependent transcription initiation
Wei Lin et al.
NATURE COMMUNICATIONS (2019)
Adaptive laboratory evolution of a genome-reduced Escherichia coli
Donghui Choe et al.
NATURE COMMUNICATIONS (2019)
Structural basis for transcription initiation by bacterial ECF σ factors
Lingting Li et al.
NATURE COMMUNICATIONS (2019)
Improvement of l-Leucine Production in Corynebacterium glutamicum by Altering the Redox Flux
Ying-Yu Wang et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
Where to begin? Sigma factors and the selectivity of transcription initiation in bacteria
John D. Helmann
MOLECULAR MICROBIOLOGY (2019)
Alternative σI/anti-σI factors represent a unique form of bacterial σ/anti-σ complex
Zhen Wei et al.
NUCLEIC ACIDS RESEARCH (2019)
mCSM-PPI2: predicting the effects of mutations on protein-protein interactions
Carlos H. M. Rodrigues et al.
NUCLEIC ACIDS RESEARCH (2019)
Structures and mechanism of transcription initiation by bacterial ECF factors
Chengli Fang et al.
NUCLEIC ACIDS RESEARCH (2019)
Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase
Patricia Sanchez-Vazquez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Enhanced production of poly-3-hydroxybutyrate (PHB) by expression of response regulator DR1558 in recombinant Escherichia coli
Sung-ho Park et al.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2019)
Conversion of Escherichia coli to Generate All Biomass Carbon from CO2
Shmuel Gleizer et al.
CELL (2019)
Metabolic engineering for improving l-tryptophan production in Escherichia coli
Hao Niu et al.
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2019)
Analysis of the nucleotide content of Escherichia coli promoter sequences related to the alternative sigma factors
Gabriel Dall'Alba et al.
JOURNAL OF MOLECULAR RECOGNITION (2019)
Engineering transcription factor BmoR for screening butanol overproducers
Huan Yu et al.
METABOLIC ENGINEERING (2019)
DksA and ppGpp Regulate the sigma(S) Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP
Mary E. Girard et al.
JOURNAL OF BACTERIOLOGY (2018)
Biofuel production with a stress-resistant and growth phase-independent promoter: mechanism revealed by in vitro transcription assays
Yi-Xin Huo et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)
Expression of global regulator IrrE for improved succinate production under high salt stress by Escherichia coli
Wenming Zhang et al.
BIORESOURCE TECHNOLOGY (2018)
Investigating the strategies for microbial production of trehalose from lignocellulosic sugars
Yifei Wu et al.
BIOTECHNOLOGY AND BIOENGINEERING (2018)
Cryo-EM structure of Escherichia coli sigma(70) RNA polymerase and promoter DNA complex revealed a role of sigma non-conserved region during the open complex formation
Anoop Narayanan et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2018)
Directed combinatorial mutagenesis of Escherichia coli for complex phenotype engineering
Rongming Liu et al.
METABOLIC ENGINEERING (2018)
Burden-driven feedback control of gene expression
Francesca Ceroni et al.
NATURE METHODS (2018)
The crystal structure of the RsbN-σBIdN complex from Streptomyces venezuelae defines a new structural class of anti-σ factor
Maria A. Schumacher et al.
NUCLEIC ACIDS RESEARCH (2018)
A sigma factor toolbox for orthogonal gene expression in Escherichia coli
Indra Bervoets et al.
NUCLEIC ACIDS RESEARCH (2018)
Layered dynamic regulation for improving metabolic pathway productivity in Escherichia coli
Stephanie J. Doong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Engineered global regulator H-NS improves the acid tolerance of E. coli
Xianxing Gao et al.
MICROBIAL CELL FACTORIES (2018)
Sensor-regulator and RNAi based bifunctional dynamic control network for engineered microbial synthesis
Yaping Yang et al.
NATURE COMMUNICATIONS (2018)
Reassessing the Structure and Function Relationship of the O2 Sensing Transcription Factor FNR
Erin L. Mettert et al.
ANTIOXIDANTS & REDOX SIGNALING (2018)
Improved xylose tolerance and 2,3-butanediol production of Klebsiella pneumoniae by directed evolution of rpoD and the mechanisms revealed by transcriptomics
Xue-Wu Guo et al.
BIOTECHNOLOGY FOR BIOFUELS (2018)
Enhanced Metabolite Productivity of Escherichia coli Adapted to Glucose M9 Minimal Medium
Peter Rugbjerg et al.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2018)
Increased production of L-serine in Escherichia coil through Adaptive Laboratory Evolution
Hemanshu Mundhada et al.
METABOLIC ENGINEERING (2017)
Engineering microbial phenotypes through rewiring of genetic networks
Oliver P. F. Windram et al.
NUCLEIC ACIDS RESEARCH (2017)
Crystal structure of Aquifex aeolicus σN bound to promoter DNA and the structure of σN-holoenzyme
Elizabeth A. Campbell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Expression of Heterologous Sigma Factor Expands the Searchable Space for Biofuel Tolerance Mechanisms
Timothy A. Tomko et al.
ACS SYNTHETIC BIOLOGY (2017)
ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response
Wilma Ross et al.
MOLECULAR CELL (2016)
Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution
Jose Utrilla et al.
CELL SYSTEMS (2016)
Global transcriptional analysis of Escherichia coli expressing IrrE, a regulator from Deinococcus radiodurans, in response to NaCl shock
Peng Zhao et al.
MOLECULAR BIOSYSTEMS (2015)
A synthetic growth switch based on controlled expression of RNA polymerase
Jerome Izard et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies
Yun Yang et al.
SCIENCE (2015)
Significantly improved solvent tolerance of Escherichia coli by global transcription machinery engineering
Fa Zhang et al.
MICROBIAL CELL FACTORIES (2015)
Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
Byung-Kwan Cho et al.
BMC BIOLOGY (2014)
Structural basis for-10 promoter element melting by environmentally induced sigma factors
Sebastien Campagne et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Rational selection and engineering of exogenous principal sigma factor (σHrdB) to increase teicoplanin production in an industrial strain of Actinoplanes teichomyceticus
Haiyong Wang et al.
MICROBIAL CELL FACTORIES (2014)
A Model for Sigma Factor Competition in Bacterial Cells
Marco Mauri et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
One-step of tryptophan attenuator inactivation and promoter swapping to improve the production of L-tryptophan in Escherichia coli
Pengfei Gu et al.
MICROBIAL CELL FACTORIES (2012)
Structural Basis for Promoter-10 Element Recognition by the Bacterial RNA Polymerase σ Subunit
Andrey Feklistov et al.
CELL (2011)
Remodeling and Activation of Escherichia coli RNA Polymerase by Osmolytes
Jay D. Gralla et al.
BIOCHEMISTRY (2008)
Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assembly
Stephanie de los Rios et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
The-35 sequence location and the Fis-sigma factor interface determine σS selectivity of the proP (P2) promoter in Escherichia coli
Athanasios Typas et al.
MOLECULAR MICROBIOLOGY (2007)
Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA
Byung-Kwan Cho et al.
MICROBIOLOGY-SGM (2006)
Identification of a turnover element in region 2.1 of Escherichia coli σ32 by a bacterial one-hybrid approach
M Obrist et al.
JOURNAL OF BACTERIOLOGY (2005)
A hydrophobic patch on the flap-tip helix of E-coli RNA polymerase mediates σ70 region 4 function
K Geszvain et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Multiple roles of the RNA polymerase β subunit flap domain in σ54-dependent transcription
SR Wigneshweraraj et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
A role for interaction of the RNA polymerase flap domain with the σ subunit in promoter recognition
K Kuznedelov et al.
SCIENCE (2002)
Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1
RT Dame et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Binding of the initiation factor σ70 to core RNA polymerase is a multistep process
TM Gruber et al.
MOLECULAR CELL (2001)
A coiled-coil from the RNA polymerase β′ subunit allosterically induces selective nontemplate strand binding by σ70
BA Young et al.
CELL (2001)
Mutational analysis of β′260-309, a σ70 binding site located on Escherichia coli core RNA polymerase
TM Arthur et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)