4.7 Review

Improving aptamer performance with nucleic acid mimics: de novo and post-SELEX approaches

Related references

Note: Only part of the references are listed.
Article Chemistry, Multidisciplinary

Generating Biologically Stable TNA Aptamers that Function with High Affinity and Thermal Stability

Matthew R. Dunn et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)

Review Biochemistry & Molecular Biology

Chemical Modification of Aptamers for Increased Binding Affinity in Diagnostic Applications: Current Status and Future Prospects

Jan P. Elskens et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Chemistry, Multidisciplinary

Discovery and evolution of RNA and XNA reverse transcriptase function and fidelity

Gillian Houlihan et al.

NATURE CHEMISTRY (2020)

Article Biochemical Research Methods

Programmed Allelic Mutagenesis of a DNA Polymerase with Single Amino Acid Resolution

Ali Nikoomanzar et al.

ACS SYNTHETIC BIOLOGY (2020)

Review Biochemistry & Molecular Biology

Modified Nucleic Acids: Expanding the Capabilities of Functional Oligonucleotides

Steven Ochoa et al.

MOLECULES (2020)

Article Chemistry, Multidisciplinary

DNA Polymerase Variants with High Processivity and Accuracy for Encoding and Decoding Locked Nucleic Acid Sequences

Hidekazu Hoshino et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)

Review Biochemistry & Molecular Biology

Methods and Applications of In Silico Aptamer Design and Modeling

Andrey A. Buglak et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Review Biochemistry & Molecular Biology

Recent Advances in Aptamer Discovery and Applications

Yang Zhang et al.

MOLECULES (2019)

Review Biochemistry & Molecular Biology

Updates on Aptamer Research

Mohamed H. Ali et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Chemistry, Multidisciplinary

A synthetic genetic polymer with an uncharged backbone chemistry based on alkyl phosphonate nucleic acids

Sebastian Arangundy-Franklin et al.

NATURE CHEMISTRY (2019)

Article Chemistry, Medicinal

One Among Millions: The Chemical Space of Nucleic Acid-Like Molecules

Henderson James Cleaves et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2019)

Review Biochemistry & Molecular Biology

Key Aspects of Nucleic Acid Library Design for in Vitro Selection

Maria A. Vorobyeva et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Chemistry, Multidisciplinary

Synthesis and Evolution of a Threose Nucleic Acid Aptamer Bearing 7-Deaza-7-Substituted Guanosine Residues

Hui Mei et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2018)

Review Biotechnology & Applied Microbiology

mRNA vaccines - a new era in vaccinology

Norbert Pardi et al.

NATURE REVIEWS DRUG DISCOVERY (2018)

Article Biochemistry & Molecular Biology

Comparison of partially and fully chemically-modified siRNA in conjugate-mediated delivery in vivo

Matthew R. Hassler et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Microbiology

Antisense Phosphorodiamidate Morpholino Oligomers as Novel Antiviral Compounds

Yuchen Nan et al.

FRONTIERS IN MICROBIOLOGY (2018)

Review Oncology

Aptamer Therapeutics in Cancer: Current and Future

Yoshihiro Morita et al.

CANCERS (2018)

Article Materials Science, Biomaterials

Barcoding chemical modifications into nucleic acids improves drug stability in vivo

Cory D. Sago et al.

JOURNAL OF MATERIALS CHEMISTRY B (2018)

Article Multidisciplinary Sciences

Evolution of a General RNA-Cleaving FANA Enzyme

Yajun Wang et al.

NATURE COMMUNICATIONS (2018)

Review Chemistry, Analytical

Investigations on the interface of nucleic acid aptamers and binding targets

Shundong Cai et al.

ANALYST (2018)

Article Chemistry, Multidisciplinary

In Situ Spatial Complementation of Aptamer-Mediated Recognition Enables Live-Cell Imaging of Native RNA Transcripts in Real Time

Zejun Wang et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2018)

Review Biochemistry & Molecular Biology

Recent Advances in SELEX Technology and Aptamer Applications in Biomedicine

Zhenjian Zhuo et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)

Article Biochemical Research Methods

A novel method for detection of H9N2 influenza viruses by an aptamer-real time-PCR

Issam Hmila et al.

JOURNAL OF VIROLOGICAL METHODS (2017)

Review Biochemistry & Molecular Biology

Biological applications of xeno nucleic acids

Kunihiko Morihiro et al.

MOLECULAR BIOSYSTEMS (2017)

Article Biochemistry & Molecular Biology

Noninvasive Microsurgery Using Aptamer-Functionalized Magnetic Microdisks for Tumor Cell Eradication

Tatiana N. Zamay et al.

NUCLEIC ACID THERAPEUTICS (2017)

Article Chemistry, Multidisciplinary

Systematic Optimization and Modification of a DNA Aptamer with 2′-O-Methyl RNA Analogues

George E. Maio et al.

CHEMISTRYSELECT (2017)

Article Multidisciplinary Sciences

Three-dimensional modeling of single stranded DNA hairpins for aptamer-based biosensors

Iman Jeddi et al.

SCIENTIFIC REPORTS (2017)

Review Biotechnology & Applied Microbiology

ABCs of DNA aptamer and related assay development

Tarun Kumar Sharma et al.

BIOTECHNOLOGY ADVANCES (2017)

Review Biochemical Research Methods

Post-SELEX optimization of aptamers

Shunxiang Gao et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2016)

Article Chemistry, Medicinal

Evaluating TNA stability under simulated physiological conditions

Michelle C. Culbertson et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2016)

Article Biochemistry & Molecular Biology

Reverse Transcription of Threose Nucleic Acid by a Naturally Occurring DNA Polymerase

Matthew R. Dunn et al.

CHEMBIOCHEM (2016)

Article Biochemical Research Methods

Enhancing aptamer function and stability via in vitro selection using modified nucleic acids

Kirsten N. Meek et al.

METHODS (2016)

Review Biochemistry & Molecular Biology

Methods for Improving Aptamer Binding Affinity

Hijiri Hasegawa et al.

MOLECULES (2016)

Article Chemistry, Multidisciplinary

Evolution of thermophilic DNA polymerases for the recognition and amplification of C2′-modified DNA

Tingjian Chen et al.

NATURE CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Structural basis for specific inhibition of Autotaxin by a DNA aptamer

Kazuki Kato et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Evoking picomolar binding in RNA by a single phosphorodithioate linkage

N. Dinuka Abeydeera et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Structural basis for specific inhibition of Autotaxin by a DNA aptamer

Kazuki Kato et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Review Biochemistry & Molecular Biology

The Toolbox for Modified Aptamers

Sergey A. Lapa et al.

MOLECULAR BIOTECHNOLOGY (2016)

Review Chemistry, Medicinal

Aptamers Overview: Selection, Features and Applications

Luiza I. Hernandez et al.

CURRENT TOPICS IN MEDICINAL CHEMISTRY (2015)

Article Biochemistry & Molecular Biology

Selection of LNA-containing DNA aptamers against recombinant human CD73

Ida C. Elle et al.

MOLECULAR BIOSYSTEMS (2015)

Review Biochemistry & Molecular Biology

Generation of Aptamers with an Expanded Chemical Repertoire

Stella Diafa et al.

MOLECULES (2015)

Review Biochemistry & Molecular Biology

Predicting the Uncertain Future of Aptamer-Based Diagnostics and Therapeutics

John G. Bruno

MOLECULES (2015)

Article Biochemical Research Methods

Directed evolution of artificial enzymes (XNAzymes) from diverse repertoires of synthetic genetic polymers

Alexander I. Taylor et al.

NATURE PROTOCOLS (2015)

Review Biotechnology & Applied Microbiology

Towards XNA nanotechnology: new materials from synthetic genetic polymers

Vitor B. Pinheiro et al.

TRENDS IN BIOTECHNOLOGY (2014)

Review Biochemistry & Molecular Biology

Phosphorothioates, Essential Components of Therapeutic Oligonucleotides

Fritz Eckstein

NUCLEIC ACID THERAPEUTICS (2014)

Article Medicine, Research & Experimental

Nucleic Acid Ligands With Protein-like Side Chains: Modified Aptamers and Their Use as Diagnostic and Therapeutic Agents

John C. Rohloff et al.

MOLECULAR THERAPY-NUCLEIC ACIDS (2014)

Article Chemistry, Multidisciplinary

An Efficient and Faithful in Vitro Replication System for Threose Nucleic Acid

Hanyang Yu et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)

Article Biochemistry & Molecular Biology

G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold

Maja Marusic et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Biochemistry & Molecular Biology

Characterization of Aptamer-Protein Complexes by X-ray Crystallography and Alternative Approaches

Vincent J. B. Ruigrok et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2012)

Article Chemistry, Multidisciplinary

Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor

Hanyang Yu et al.

NATURE CHEMISTRY (2012)

Article Multidisciplinary Sciences

Synthetic Genetic Polymers Capable of Heredity and Evolution

Vitor B. Pinheiro et al.

SCIENCE (2012)

Article Biochemistry & Molecular Biology

Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer

Anna Pasternak et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia

Prabodhika R. Mallikaratchy et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Biochemical Research Methods

Prediction and design of DNA and RNA structures

Ebbe Sloth Andersen

NEW BIOTECHNOLOGY (2010)

Review Chemistry, Multidisciplinary

2′F-arabinonucleic acids (2′F-ANA) -: History, properties, and new frontiers

Jonathan K. Watts et al.

CANADIAN JOURNAL OF CHEMISTRY (2008)

Article Biochemical Research Methods

Post-SELEX Chemical Optimization of a Trypanosome-Specific RNA Aptamer

H. Goringer et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2008)

Article Biochemistry & Molecular Biology

Effect of locked-nucleic acid on a biologically active G-quadruplex. A structure-activity relationship of the thrombin aptamer

Laura Bonifacio et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2008)

Review Biochemical Research Methods

SELEX-A (r)evolutionary method to generate high-affinity nucleic acid ligands

Regina Stoltenburg et al.

BIOMOLECULAR ENGINEERING (2007)

Article Biochemistry & Molecular Biology

A novel thrombin binding aptamer containing a G-LNA residue

Ada Virno et al.

BIOORGANIC & MEDICINAL CHEMISTRY (2007)

Article Biochemistry & Molecular Biology

G-quadruplex induced stabilization by 2'-deoxy-2'-fluoro-D-arabinonucleic acids (2'F-ANA)

Chang Geng Peng et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Systematic screening of LNA/2′-O-methyl chimeric derivatives of a TAR RNA aptamer

Carmelo Di Primo et al.

FEBS LETTERS (2007)

Article Chemistry, Multidisciplinary

Non-SELEX selection of aptamers

M Berezovski et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Review Biotechnology & Applied Microbiology

Pegaptanib, a targeted anti-VEGF aptamer for ocular vascular disease

EWM Ng et al.

NATURE REVIEWS DRUG DISCOVERY (2006)

Article Biochemistry & Molecular Biology

2 '-deoxy purine, 2 '-O-methyl pyrimidine (dRmY) aptamers as candidate therapeutics

Paula E. Burmeister et al.

OLIGONUCLEOTIDES (2006)

Article Biochemistry & Molecular Biology

Direct in vitro selection of a 2 '-O-methyl aptamer to VEGF

PE Burmeister et al.

CHEMISTRY & BIOLOGY (2005)

Article Biochemistry & Molecular Biology

New NTP analogs: the synthesis of 4 '-thioUTP and 4 '-thioCTP and their utility for SELEX

Y Kato et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Application of locked nucleic acids to improve aptamer in vivo stability and targeting function

KS Schmidt et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

LNA/DNA chimeric oligomers mimic RNA aptamers targeted to the TAR RNA element of HIV-1

F Darfeuille et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Nuclease stability of LNA oligonucleotides and LNA-DNA chimeras

M Frieden et al.

NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS (2003)

Article Multidisciplinary Sciences

Loop-loop interaction of HIV-1 TAR RNA with N3′→P5′ deoxyphosphoramidate aptamers inhibits in vitro Tat-mediated transcription

F Darfeuille et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Boron-containing aptamers to ATP

SM Lato et al.

NUCLEIC ACIDS RESEARCH (2002)

Review Biochemistry & Molecular Biology

Backbone modification of nucleic acids: Synthesis, structure and therapeutic applications

J Micklefield

CURRENT MEDICINAL CHEMISTRY (2001)