Related references
Note: Only part of the references are listed.Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework
Md Mehedi Hasan et al.
BRIEFINGS IN BIOINFORMATICS (2021)
i6mA-stack: A stacking ensemble-based computational prediction of DNA N6-methyladenine (6mA) sites in the Rosaceae genome
Jhabindra Khanal et al.
GENOMICS (2021)
Histone posttranslational modifications rather than DNA methylation underlie gene reprogramming in pollination-dependent and pollination-independent fruit set in tomato
Guojian Hu et al.
NEW PHYTOLOGIST (2021)
Poplar acetylome profiling reveals lysine acetylation dynamics in seasonal bud dormancy release
Xiaoli Liao et al.
PLANT CELL AND ENVIRONMENT (2021)
Deep6mA: A deep learning framework for exploring similar patterns in DNA N6-methyladenine sites across different species
Zutan Li et al.
PLOS COMPUTATIONAL BIOLOGY (2021)
DNA Modification Patterns within the Transposable Elements of the Fig (Ficus carica L.) Genome
Gabriele Usai et al.
PLANTS-BASEL (2021)
In-vitro grafting - Current applications and future prospects
Laxmi Chilukamarri et al.
SCIENTIA HORTICULTURAE (2021)
Harnessing Current Knowledge of DNA N6-Methyladenosine From Model Plants for Non-model Crops
Sadaruddin Chachar et al.
FRONTIERS IN GENETICS (2021)
A deep learning approach to automate whole-genome prediction of diverse epigenomic modifications in plants
Yifan Wang et al.
NEW PHYTOLOGIST (2021)
Rice and Arabidopsis homologs of yeast CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4 commonly interact with Polycomb complexes but exert divergent regulatory functions
Pingxian Zhang et al.
PLANT CELL (2021)
Quantitative profiling of N6-methyladenosine at single-base resolution in stem-differentiating xylem of Populus trichocarpa using Nanopore direct RNA sequencing
Yubang Gao et al.
GENOME BIOLOGY (2021)
Fruit-dependent epigenetic regulation of flowering in Citrus
Manuel Agusti et al.
NEW PHYTOLOGIST (2020)
Genome-wide Target Mapping Shows Histone Deacetylase Complex1 Regulates Cell Proliferation in Cucumber Fruit
Zhen Zhang et al.
PLANT PHYSIOLOGY (2020)
Epigenetic Flexibility Underlies Somaclonal Sex Conversions in Hexaploid Persimmon
Kanae Masuda et al.
PLANT AND CELL PHYSIOLOGY (2020)
Epigenetic Modifications of mRNA and DNA in Plants
Zhe Liang et al.
MOLECULAR PLANT (2020)
eRice: a refined epigenomic platform for japonica and indica rice
Pingxian Zhang et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
DNA demethylation is involved in the regulation of temperature-dependent anthocyanin accumulation in peach
Yong-Chao Zhu et al.
PLANT JOURNAL (2020)
i6mA-Fuse: improved and robust prediction of DNA 6 mA sites in the Rosaceae genome by fusing multiple feature representation
Md Mehedi Hasan et al.
PLANT MOLECULAR BIOLOGY (2020)
N6-Methyladenine DNA Modification in the Woodland Strawberry (Fragaria vesca) Genome Reveals a Positive Relationship With Gene Transcription
Shang-Qian Xie et al.
FRONTIERS IN GENETICS (2020)
Like Heterochromatin Protein 1b represses fruit ripening via regulating the H3K27me3 levels in ripening-related genes in tomato
Qi Liang et al.
NEW PHYTOLOGIST (2020)
Fruit development and epigenetic modifications
Dengguo Tang et al.
NEW PHYTOLOGIST (2020)
Discovery of a millennial androecious germplasm and its potential in persimmon (Diospyros kaki Thunb.) breeding
Changfei Guan et al.
SCIENTIA HORTICULTURAE (2020)
RNA 5-Methylcytosine Controls Plant Development and Environmental Adaptation
Pingxian Zhang et al.
TRENDS IN PLANT SCIENCE (2020)
Efficient chromatin profiling of H3K4me3 modification in cotton using CUT&Tag
Xiaoyuan Tao et al.
PLANT METHODS (2020)
WUSCHEL triggers innate antiviral immunity in plant stem cells
Haijun Wu et al.
SCIENCE (2020)
Messenger RNA Modifications in Plants
Lisha Shen et al.
TRENDS IN PLANT SCIENCE (2019)
Advances in epigenetics link genetics to the environment and disease
Giacomo Cavalli et al.
NATURE (2019)
CUT&Tag for efficient epigenomic profiling of small samples and single cells
Hatice S. Kaya-Okur et al.
NATURE COMMUNICATIONS (2019)
MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae
Zhao-Yu Liu et al.
HORTICULTURE RESEARCH (2019)
m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants
Lei Yang et al.
CURRENT BIOLOGY (2019)
Methylation content sensitive enzyme ddRAD (MCSeEd): a reference-free, whole genome profiling system to address cytosine/adenine methylation changes
Gianpiero Marconi et al.
SCIENTIFIC REPORTS (2019)
Genome sequences of horticultural plants: past, present, and future
Fei Chen et al.
HORTICULTURE RESEARCH (2019)
Global increase in DNA methylation during orange fruit development and ripening
Huan Huang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
RNA methylomes reveal the m6A-mediated regulation of DNA demethylase gene SlDML2 in tomato fruit ripening
Leilei Zhou et al.
GENOME BIOLOGY (2019)
Two Y-chromosome-encoded genes determine sex in kiwifruit
Takashi Akagi et al.
NATURE PLANTS (2019)
Single-base methylome analysis reveals dynamic epigenomic differences associated with water deficit in apple
Jidi Xu et al.
PLANT BIOTECHNOLOGY JOURNAL (2018)
DNA N 6 -Adenine Methylation in Arabidopsis thaliana
Zhe Liang et al.
DEVELOPMENTAL CELL (2018)
Dynamics and function of DNA methylation in plants
Huiming Zhang et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
Comparative epigenomics reveals evolution of duplicated genes in potato and tomato
Lin Wang et al.
PLANT JOURNAL (2018)
Winter-dormant shoot apical meristem in poplar trees shows environmental epigenetic memory
Anne-Laure Le Gac et al.
JOURNAL OF EXPERIMENTAL BOTANY (2018)
N-6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses
Qian Zhang et al.
MOLECULAR PLANT (2018)
Downregulation of RdDM during strawberry fruit ripening
Jingfei Cheng et al.
GENOME BIOLOGY (2018)
The association of changes in DNA methylation with temperature-dependent sex determination in cucumber
Yun-Song Lai et al.
JOURNAL OF EXPERIMENTAL BOTANY (2017)
High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
Nicolas Daccord et al.
NATURE GENETICS (2017)
Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit
Zhaobo Lang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Genome Regulation by Polycomb and Trithorax: 70 Years and Counting
Bernd Schuettengruber et al.
CELL (2017)
Epigenetic memory and cell fate reprogramming in plants
Kenneth D. Birnbaum et al.
REGENERATION (2017)
N6-Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis
Lisha Shen et al.
DEVELOPMENTAL CELL (2016)
m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination
Irmgard U. Haussmann et al.
NATURE (2016)
The molecular hallmarks of epigenetic control
C. David Allis et al.
NATURE REVIEWS GENETICS (2016)
Validation of a male-linked gene locus (OGI) for sex identification in persimmon (Diospyros kaki Thunb.) and its application in F1 progeny
Ping-Xian Zhang et al.
PLANT BREEDING (2016)
Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon
Takashi Akagi et al.
PLANT CELL (2016)
A CURLY LEAF homologue controls both vegetative and reproductive development of tomato plants
L. Boureau et al.
PLANT MOLECULAR BIOLOGY (2016)
Mobile small RNAs regulate genome-wide DNA methylation
Mathew G. Lewsey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation
Bo Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A male determinant gene in diploid dioecious Diospyros, OGI, is required for male flower production in monoecious individuals of Oriental persimmon (D-kaki)
Takashi Akagi et al.
SCIENTIA HORTICULTURAE (2016)
DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening
Philippe Gallusci et al.
FRONTIERS IN PLANT SCIENCE (2016)
Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana
Elisa Schulz et al.
SCIENTIFIC REPORTS (2016)
Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula
Carine Satge et al.
NATURE PLANTS (2016)
Methylome evolution in plants
Amaryllis Vidalis et al.
GENOME BIOLOGY (2016)
Polycomb repression in the regulation of growth and development in Arabidopsis
Jun Xiao et al.
CURRENT OPINION IN PLANT BIOLOGY (2015)
Dynamic m6A mRNA methylation directs translational control of heat shock response
Jun Zhou et al.
NATURE (2015)
A DEMETER-like DNA demethylase governs tomato fruit ripening
Ruie Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
PcG and trxG in plants - friends or foes
Li Pu et al.
TRENDS IN GENETICS (2015)
Genome-wide identification of sweet orange (Citrus sinensis) histone modification gene families and their expression analysis during the fruit development and fruit-blue mold infection process
Jidi Xu et al.
FRONTIERS IN PLANT SCIENCE (2015)
Identification and characterization of histone deacetylases in tomato (Solanum lycopersicum)
Linmao Zhao et al.
FRONTIERS IN PLANT SCIENCE (2015)
Histone modification and signalling cascade of the dormancy-associated MADS-box gene, PpMADS13-1, in Japanese pear (Pyrus pyrifolia) during endodormancy
Takanori Saito et al.
PLANT CELL AND ENVIRONMENT (2015)
Epigenetic memory in plants
Mayumi Iwasaki et al.
EMBO JOURNAL (2014)
The dynamic epitranscriptome: N6-methyladenosine and gene expression control
Kate D. Meyer et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2014)
A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons
Takashi Akagi et al.
SCIENCE (2014)
Unique features of the m6A methylome in Arabidopsis thaliana
Guan-Zheng Luo et al.
NATURE COMMUNICATIONS (2014)
Natural occurring epialleles determine vitamin E accumulation in tomato fruits
Leandro Quadrana et al.
NATURE COMMUNICATIONS (2014)
Chromatin dynamics during plant sexual reproduction
Wenjing She et al.
FRONTIERS IN PLANT SCIENCE (2014)
What lies beyond the eye: the molecular mechanisms regulating tomato fruit weight and shape
Esther van der Knaap et al.
FRONTIERS IN PLANT SCIENCE (2014)
Vernalization and photoperiod-related changes in the DNA methylation state in winter and spring rapeseed
Justyna Guzy-Wrobelska et al.
ACTA PHYSIOLOGIAE PLANTARUM (2013)
Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles
Riccardo Aiese Cigliano et al.
BMC GENOMICS (2013)
Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
Michael Stevens et al.
GENOME RESEARCH (2013)
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
Silin Zhong et al.
NATURE BIOTECHNOLOGY (2013)
DNA methylation: roles in mammalian development
Zachary D. Smith et al.
NATURE REVIEWS GENETICS (2013)
Molecular and genetic regulation of fruit ripening
Nigel E. Gapper et al.
PLANT MOLECULAR BIOLOGY (2013)
The Methylation of the PcMYB10 Promoter Is Associated with Green-Skinned Sport in Max Red Bartlett Pear
Zhigang Wang et al.
PLANT PHYSIOLOGY (2013)
Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner
Carmen Leida et al.
NEW PHYTOLOGIST (2012)
Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
Fumihito Miura et al.
NUCLEIC ACIDS RESEARCH (2012)
Identification and Characterization of an Epi-Allele of FIE1 Reveals a Regulatory Linkage between Two Epigenetic Marks in Rice
Liguo Zhang et al.
PLANT CELL (2012)
Histone modifications in transcriptional activation during plant development
Alexandre Berr et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2011)
Apple skin patterning is associated with differential expression of MYB10
Adriana Telias et al.
BMC PLANT BIOLOGY (2011)
Intercellular and systemic movement of RNA silencing signals
Charles W. Melnyk et al.
EMBO JOURNAL (2011)
Epigenetic repressor-like genes are differentially regulated during grapevine (Vitis vinifera L.) development
Ruben Almada et al.
PLANT CELL REPORTS (2011)
Genome-wide analysis of the SET DOMAIN GROUP family in Grapevine
Felipe Aquea et al.
PLANT CELL REPORTS (2011)
Histone Methylation in Higher Plants
Chunyan Liu et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 61 (2010)
Conserved role of intragenic DNA methylation in regulating alternative promoters
Alika K. Maunakea et al.
NATURE (2010)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
NATURE REVIEWS GENETICS (2010)
Functional analysis of SlEZ1 a tomato Enhancer of zeste (E(z)) gene demonstrates a role in flower development
A. How Kit et al.
PLANT MOLECULAR BIOLOGY (2010)
Analysis of histone acetyltransferase and deacetylase families of Vitis vinifera
Felipe Aquea et al.
PLANT PHYSIOLOGY AND BIOCHEMISTRY (2010)
Epigenetic Reprogramming in Plant and Animal Development
Suhua Feng et al.
SCIENCE (2010)
Role of grafting in vegetable crops grown under saline conditions
Giuseppe Colla et al.
SCIENTIA HORTICULTURAE (2010)
A transposon-induced epigenetic change leads to sex determination in melon
Antoine Martin et al.
NATURE (2009)
Evidence for a photoprotective function of low-temperature-induced anthocyanin accumulation in apple and pear peel
Willem J. Steyn et al.
PHYSIOLOGIA PLANTARUM (2009)
Global gene expression analysis of apple fruit development from the floral bud to ripe fruit
Bart J. Janssen et al.
BMC PLANT BIOLOGY (2008)
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Shawn J. Cokus et al.
NATURE (2008)
Gene expression and metabolism in tomato fruit surface tissues
Shira Mintz-Oron et al.
PLANT PHYSIOLOGY (2008)
Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening
E. Teyssier et al.
PLANTA (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Epigenetics: A landscape takes shape
Aaron D. Goldberg et al.
CELL (2007)
Physiological relationships among physical, sensory, and morphological attributes of texture in tomato fruits
Jamila Chaib et al.
JOURNAL OF EXPERIMENTAL BOTANY (2007)
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27
Franziska Turck et al.
PLOS GENETICS (2007)
Epigenetic mechanisms governing seed development in plants
Claudia Koehler et al.
EMBO REPORTS (2006)
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
Kenneth Manning et al.
NATURE GENETICS (2006)
Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
A Meissner et al.
NUCLEIC ACIDS RESEARCH (2005)