4.7 Review

Application of metagenomics to biological wastewater treatment

Related references

Note: Only part of the references are listed.
Article Biophysics

Interspecific competition by non-exoelectrogenic Citrobacter freundii An1 boosts bioelectricity generation of exoelectrogenic Shewanella oneidensis MR-1

Yong Xiao et al.

Summary: The study shows that interspecific competition significantly influences the performance of bioelectrochemical systems, enhancing the metabolic activity and exoelectrogenic capacity of S. oneidensis MR-1. This competition helps S. oneidensis MR-1 to form biofilms on electrodes and gain a competitive advantage over C. freundii An1.

BIOSENSORS & BIOELECTRONICS (2021)

Article Agricultural Engineering

Metagenomic analysis for profiling of microbial communities and tolerance in metal-polluted pulp and paper industry wastewater

Pooja Sharma et al.

Summary: This study investigated the profiling and efficiency of microbial communities in pulp and paper industry wastewater, identifying major phyla such as Proteobacteria, Bacteroidetes, and Firmicutes. The findings highlighted the essential role of microbial communities in oxidizing and detoxifying complex contaminants, leading to the design of effective remediation techniques for polluted wastewater. Further research attention may be given to the adaptation and survival ability of different classes of microbes in metal-polluted wastewater for bioremediation purposes.

BIORESOURCE TECHNOLOGY (2021)

Article Agricultural Engineering

Effects of humic acid on sludge performance, antibiotics resistance genes propagation and functional genes expression during Cu(II)-containing wastewater treatment via metagenomics analysis

Jianguo Zhao et al.

Summary: The study found that humic acid (HA) has an impact on sludge performance, antibiotics resistance genes (ARGs) propagation, and functional genes expression during Cu(II)-containing wastewater treatment. HA addition can alleviate the inhibitory effects of Cu(II), but does not significantly affect microbial community and functional genes expression.

BIORESOURCE TECHNOLOGY (2021)

Article Engineering, Environmental

Metagenomic prediction analysis of microbial aggregation in anammox-dominated community

Fangxu Jia et al.

Summary: The study utilized PICRUSt to predict metagenomic potentials and characterize the microbial community structure in anammox aggregates, revealing Candidatus Brocadia as the dominant anammox genus. It also explored the aggregation pathway of anammox bacteria, highlighting their strong motility, attachment capability, EPS synthesis, and c-di-GMP synthesis in maintaining a stable structure. These findings contribute to enhancing the stability of anammox processes through genetic-level understanding of microbial aggregation mechanism.

WATER ENVIRONMENT RESEARCH (2021)

Article Environmental Sciences

Metagenomic analysis of urban wastewater resistome and mobilome: A support for antimicrobial resistance surveillance in an endemic country

Erika A. Rodriguez et al.

Summary: This study utilized shotgun metagenomics and culture-based approaches to determine the bacterial community composition, resistome, and mobilome at a wastewater treatment plant in Antioquia, Colombia. The research found marked differences in bacterial community composition, resistome, and mobilome at different sampling points, indicating that wastewater treatment plants are hotspots for antimicrobial resistance.

ENVIRONMENTAL POLLUTION (2021)

Review Environmental Sciences

Insights into the fate and removal of antibiotics and antibiotic resistance genes using biological wastewater treatment technology

Ting-ting Zhu et al.

Summary: This review discusses the fate of antibiotics and ARGs in wastewater treatment plants, highlighting the importance of biological treatment technologies and combined processes. It emphasizes that adsorption and biodegradation are the major removal pathways for antibiotics, and suggests further investigation into combined technologies for future application prospects.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Engineering, Environmental

Accumulibacter diversity at the sub-clade level impacts enhanced biological phosphorus removal performance

Srdana Kolakovic et al.

Summary: This study investigated the relationship between the diversity of Accumulibacter and EBPR performance, revealing that changes in the community structure and conditions of Accumulibacter under different operating conditions can influence the success or failure of EBPR operation.

WATER RESEARCH (2021)

Article Biochemical Research Methods

Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data

Jasmine Chong et al.

NATURE PROTOCOLS (2020)

Article Multidisciplinary Sciences

Extracellular electron transfer-dependent anaerobic oxidation of ammonium by anammox bacteria

Dario R. Shaw et al.

NATURE COMMUNICATIONS (2020)

Review Microbiology

What Is Metagenomics Teaching Us, and What Is Missed?

Felicia N. New et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 74, 2020 (2020)

Article Engineering, Chemical

Microbial niche nexus sustaining biological wastewater treatment

Guangxue Wu et al.

NPJ CLEAN WATER (2020)

Article Engineering, Environmental

Larger Anammox Granules not only Harbor Higher Species Diversity but also Support More Functional Diversity

Hui Chen et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2020)

Article Engineering, Environmental

Metagenomic analysis of the inhibitory effect of chromium on microbial communities and removal efficiency in A2O sludge

Fu-Lin Sun et al.

JOURNAL OF HAZARDOUS MATERIALS (2019)

Article Biotechnology & Applied Microbiology

Methane oxidation coupled to vanadate reduction in a membrane biofilm batch reactor under hypoxic condition

Zhen Wang et al.

BIODEGRADATION (2019)

Article Biotechnology & Applied Microbiology

Genome-centered omics insight into the competition and niche differentiation of Ca. Jettenia and Ca. Brocadia affiliated to anammox bacteria

Yunpeng Zhao et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2019)

Article Environmental Sciences

Sustainable bioreduction of toxic levels of chromate in a denitrifying granular sludge reactor

G. Kiran Kumar Reddy et al.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2018)

Article Engineering, Environmental

Microbial electricity driven anoxic ammonium removal

Anna Vilajeliu-Pons et al.

WATER RESEARCH (2018)

Article Engineering, Environmental

Role of Extracellular Polymeric Substances in a Methane Based Membrane Biofilm Reactor Reducing Vanadate

Chun-Yu Lai et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2018)

Article Ecology

Diversity is the question, not the answer

Ashley Shade

ISME JOURNAL (2017)

Article Multidisciplinary Sciences

Metabolic network analysis reveals microbial community interactions in anammox granules

Christopher E. Lawson et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

Development of Quantitative Real-time PCR Assays for Different Clades of Candidatus Accumulibacter

An Ni Zhang et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

The most widespread problems in the function-based microbial metagenomics

Agnieszka Felczykowska et al.

ACTA BIOCHIMICA POLONICA (2015)

Article Multidisciplinary Sciences

Complete nitrification by Nitrospira bacteria

Holger Daims et al.

NATURE (2015)

Review Microbiology

Tackling antibiotic resistance: the environmental framework

Thomas U. Berendonk et al.

NATURE REVIEWS MICROBIOLOGY (2015)

Article Microbiology

Expanding our view of genomic diversity in Candidatus Accumulibacter clades

Connor T. Skennerton et al.

ENVIRONMENTAL MICROBIOLOGY (2015)

Review Biotechnology & Applied Microbiology

Alternative hosts for functional (meta)genome analysis

Wolfgang Liebl et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

Mads Albertsen et al.

NATURE BIOTECHNOLOGY (2013)

Editorial Material Microbiology

Microbiome, demystifying the role of microbial communities in the biosphere

K. Eric Wommack et al.

MICROBIOME (2013)

Article Engineering, Environmental

Ultraviolet Disinfection of Antibiotic Resistant Bacteria and Their Antibiotic Resistance Genes in Water and Wastewater

Chad W. McKinney et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2012)

Review Environmental Sciences

Removal of heavy metal ions from wastewaters: A review

Fenglian Fu et al.

JOURNAL OF ENVIRONMENTAL MANAGEMENT (2011)

Review Chemistry, Multidisciplinary

New trends in removing heavy metals from industrial wastewater

M. A. Barakat

ARABIAN JOURNAL OF CHEMISTRY (2011)

Review Microbiology

Horizontal gene exchange in environmental microbiota

Rustam I. Aminov

FRONTIERS IN MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

Sebastian Luecker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Editorial Material Multidisciplinary Sciences

ECOLOGY Controlling Eutrophication: Nitrogen and Phosphorus

Daniel J. Conley et al.

SCIENCE (2009)

Review Microbiology

Mining enzymes from extreme environments

Manuel Ferrer et al.

CURRENT OPINION IN MICROBIOLOGY (2007)

Article Engineering, Environmental

Temporal and spatial trends in the occurrence of human and veterinary antibiotics in aqueous and river sediment matrices

Sung-Chul Kim et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

Hector Garcia Martin et al.

NATURE BIOTECHNOLOGY (2006)

Review Engineering, Environmental

Physico-chemical treatment techniques for wastewater laden with heavy metals

TA Kurniawan et al.

CHEMICAL ENGINEERING JOURNAL (2006)