Related references
Note: Only part of the references are listed.Tracking the transition to agriculture in Southern Europe through ancient DNA analysis of dental calculus
Claudio Ottoni et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Combined methodologies for gaining much information from ancient dental calculus: testing experimental strategies for simultaneously analysing DNA and food residues
Alessandra Modi et al.
ARCHAEOLOGICAL AND ANTHROPOLOGICAL SCIENCES (2020)
Sulfate-Reducing Bacteria of the Oral Cavity and Their Relation with Periodontitis-Recent Advances
Ivan Kushkevych et al.
JOURNAL OF CLINICAL MEDICINE (2020)
New AMS 14C dates track the arrival and spread of broomcorn millet cultivation and agricultural change in prehistoric Europe
Dragana Filipovic et al.
SCIENTIFIC REPORTS (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
New characteristics of the papillae phytolith morphotype recovered from eleven genera of cyperaceae
Mayra Stevanato et al.
FLORA (2019)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
Metagenomic analysis of dental calculus in ancient Egyptian baboons
Claudio Ottoni et al.
SCIENTIFIC REPORTS (2019)
Algorithms and strategies in short-read shotgun metagenomic reconstruction of plant communities
Robert S. Harbert
APPLICATIONS IN PLANT SCIENCES (2018)
Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between Actinomyces odontolyticus and Its Saccharibacteria epibiont, a Nanosynbacter lyticus Strain, TM7x
Joseph K. Bedree et al.
FRONTIERS IN MICROBIOLOGY (2018)
Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa et al.
NATURE METHODS (2018)
The oral microbiota: dynamic communities and host interactions
Richard J. Lamont et al.
NATURE REVIEWS MICROBIOLOGY (2018)
The Lateglacial and Holocene vegetation and climate history of Lago di Mezzano (central Italy)
Laura Sadori
QUATERNARY SCIENCE REVIEWS (2018)
Role of microbial biofilms in the maintenance of oral health and in the development of dental caries and periodontal diseases. Consensus report of group 1 of the Joint EFP/ORCA workshop on the boundaries between caries and periodontal disease
Mariano Sanz et al.
JOURNAL OF CLINICAL PERIODONTOLOGY (2017)
Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus
Laura S. Weyrich et al.
NATURE (2017)
Beyond food: The multiple pathways for inclusion of materials into ancient dental calculus
Anita Radini et al.
AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY (2017)
Bracken: estimating species abundance in metagenomics data
Jennifer Lu et al.
PEERJ COMPUTER SCIENCE (2017)
Phenotypic and Physiological Characterization of the Epibiotic Interaction Between TM7x and Its Basibiont Actinomyces
Batbileg Bor et al.
MICROBIAL ECOLOGY (2016)
metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data
Guillaume Louvel et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Actinomyces spp. gene expression in root caries lesions
Naile Dame-Teixeira et al.
JOURNAL OF ORAL MICROBIOLOGY (2016)
EAGER: efficient ancient genome reconstruction
Alexander Peltzer et al.
GENOME BIOLOGY (2016)
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Duy Tin Truong et al.
NATURE METHODS (2015)
A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome
Christina Warinner et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
Epidermal Patterning and Silica Phytoliths in Grasses: An Evolutionary History
Paula J. Rudall et al.
BOTANICAL REVIEW (2014)
Shotgun microbial profiling of fossil remains
C. Der Sarkissian et al.
MOLECULAR ECOLOGY (2014)
Pathogens and host immunity in the ancient human oral cavity
Christina Warinner et al.
NATURE GENETICS (2014)
Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Boulos Chalhoub et al.
SCIENCE (2014)
Mongolians core gut microbiota and its correlation with seasonal dietary changes
Jiachao Zhang et al.
SCIENTIFIC REPORTS (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Hakon Jonsson et al.
BIOINFORMATICS (2013)
Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions
Christina J. Adler et al.
NATURE GENETICS (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
Jesse Dabney et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
THE ARCHAEOBOTANY OF NEOLITHIC AND BRONZE AGE CRETE: SYNTHESIS AND PROSPECTS
Alexandra Livarda et al.
ANNUAL OF THE BRITISH SCHOOL AT ATHENS (2013)
Setting the stage - Building and working in an ancient DNA laboratory
Michael Knapp et al.
ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER (2012)
Improving ancient DNA read mapping against modern reference genomes
Mikkel Schubert et al.
BMC GENOMICS (2012)
Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota
Matteo Serino et al.
GUT (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
phangorn: phylogenetic analysis in R
Klaus Peter Schliep
BIOINFORMATICS (2011)
Thermal processing effects on the functional properties and microstructure of lentil, chickpea, and pea flours
Zhen Ma et al.
FOOD RESEARCH INTERNATIONAL (2011)
Olsenella umbonata sp. nov., a microaerotolerant anaerobic lactic acid bacterium from the sheep rumen and pig jejunum, and emended descriptions of Olsenella, Olsenella uli and Olsenella profusa
Mareike Kraatz et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)
Evaluating the usefulness of phytoliths and starch grains found on survey artifacts
Thomas C. Hart
JOURNAL OF ARCHAEOLOGICAL SCIENCE (2011)
The Role of Bacteria in the Caries Process: Ecological Perspectives
N. Takahashi et al.
JOURNAL OF DENTAL RESEARCH (2011)
Bayesian community-wide culture-independent microbial source tracking
Dan Knights et al.
NATURE METHODS (2011)
Seasonal dynamics of biomass, inulin, and water-soluble sugars in roots of Cynara cardunculus L.
Salvatore Antonino Raccuia et al.
FIELD CROPS RESEARCH (2010)
Composition, molecular structure, properties, and modification of pulse starches: A review
R. Hoover et al.
FOOD RESEARCH INTERNATIONAL (2010)
The origins of metallurgy in central Italy: new radiometric evidence
Andrea Dolfini
ANTIQUITY (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
The Holocene landscape history of the NW Italian coasts
Cristina Bellini et al.
HOLOCENE (2009)
Changes in starch grain morphologies from cooking
Amanda G. Henry et al.
JOURNAL OF ARCHAEOLOGICAL SCIENCE (2009)
Phytoliths Analysis for the Discrimination of Foxtail Millet (Setaria italica) and Common Millet (Panicum miliaceum)
Houyuan Lu et al.
PLOS ONE (2009)
Prehistory of plant growing and collecting in northern Italy, based on seed remains from the early Neolithic to the Chalcolithic (c. 5600-2100 cal B. C.)
Mauro Rottoli et al.
VEGETATION HISTORY AND ARCHAEOBOTANY (2009)
Plant gathering and cultivation in prehistoric Tuscany (Italy)
Cristina Bellini et al.
VEGETATION HISTORY AND ARCHAEOBOTANY (2008)
Grinding flour in Upper Palaeolithic Europe (25 000 years bp)
Biancamaria Aranguren et al.
ANTIQUITY (2007)
The domestication of artichoke and cardoon: From roman times to the genomic age
Gabriella Sonnante et al.
ANNALS OF BOTANY (2007)
Vegetation history, climate and human impact over the last 15,000 years at Lago dell'Accesa (Tuscany, Central Italy)
Ruth Drescher-Schneider et al.
VEGETATION HISTORY AND ARCHAEOBOTANY (2007)
Investigation of digestibility in vitro and physicochemical properties of A- and B-type starch from soft and hard wheat flour
Q. Liu et al.
CEREAL CHEMISTRY (2007)
International Code for Phytolith Nomenclature 1.0
M Madella et al.
ANNALS OF BOTANY (2005)
Porphyromonas gingivalis, Treponema denticola, and Tannerella forsythia:: the 'red complex', a prototype polybacterial pathogenic consortium in periodontitis
SC Holt et al.
PERIODONTOLOGY 2000 (2005)
Relationship between α-amylase degradation and the structure and physicochemical properties of legume starches
Y Zhou et al.
CARBOHYDRATE POLYMERS (2004)
PCR amplification of wheat sequences from DNA extracted during milling and baking
M Tilley
CEREAL CHEMISTRY (2004)
Morphology and distribution of epidermal phytoliths in Triticum aestivum L.
R Ponzi et al.
PLANT BIOSYSTEMS (2003)
Sediments from Lago di Mezzano, central Italy: a record of Lateglacial/Holocene climatic variations and anthropogenic impact
A Ramrath et al.
HOLOCENE (2000)