Related references
Note: Only part of the references are listed.Lysosomal cathepsin creates chimeric epitopes for diabetogenic CD4 T cells via transpeptidation
Brendan Reed et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2021)
Mechanistic diversity in MHC class I antigen recognition
Camila R. R. Barbosa et al.
BIOCHEMICAL JOURNAL (2021)
Spliced HLA-bound peptides: a Black Swan event in immunology
P. Faridi et al.
CLINICAL AND EXPERIMENTAL IMMUNOLOGY (2021)
Identification of spliced peptides in pancreatic islets uncovers errors leading to false assignments
Cheryl F. Lichti
PROTEOMICS (2021)
Most non-canonical proteins uniquely populate the proteome or immunopeptidome
Maria Virginia Ruiz Cuevas et al.
CELL REPORTS (2021)
Are There Indeed Spliced Peptides in the Immunopeptidome?
Arie Admon
MOLECULAR & CELLULAR PROTEOMICS (2021)
Enhancing proteasomal processing improves survival for a peptide vaccine used to treat glioblastoma
Mario Fidanza et al.
SCIENCE TRANSLATIONAL MEDICINE (2021)
Is the Immunopeptidome Getting Darker?: A Commentary on the Discussion around Mishto et al., 2019
Anthony W. Purcell
FRONTIERS IN IMMUNOLOGY (2021)
Response: Commentary: An In Silico- In Vitro Pipeline Identifying an HLA-A*02:01+KRAS G12V+Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients
Michele Mishto et al.
FRONTIERS IN IMMUNOLOGY (2021)
Hybrid Insulin Peptides Are Recognized by Human T Cells in the Context of DRB1*04:01
David Arribas-Layton et al.
DIABETES (2020)
The Choice of HLA-Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire
Annalisa Nicastri et al.
PROTEOMICS (2020)
Large database for the analysis and prediction of spliced and non-spliced peptide generation by proteasomes
Gerd Specht et al.
SCIENTIFIC DATA (2020)
What We See, What We Do Not See, and What We Do Not Want to See in HLA Class I Immunopeptidomes
Michele Mishto
PROTEOMICS (2020)
Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma
Pouya Faridi et al.
CANCER IMMUNOLOGY RESEARCH (2020)
Alignment and mapping methodology influence transcript abundance estimation
Avi Srivastava et al.
GENOME BIOLOGY (2020)
Proteolytic dynamics of human 20S thymoproteasome
Ulrike Kuckelkorn et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2019)
Untangling Extracellular Proteasome-Osteopontin Circuit Dynamics in Multiple Sclerosis
Chiara Dianzani et al.
CELLS (2019)
Mass spectrometry based identification of MHC-bound peptides for immunopeptidomics
Anthony W. Purcell et al.
NATURE PROTOCOLS (2019)
How C-terminal additions to insulin B-chain fragments create superagonists for T cells in mouse and human type 1 diabetes
Yang Wang et al.
SCIENCE IMMUNOLOGY (2019)
Response to Comment on A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands
Pouya Faridi et al.
SCIENCE IMMUNOLOGY (2019)
MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics
Leon Bichmann et al.
JOURNAL OF PROTEOME RESEARCH (2019)
Characterization of Fully Recombinant Human 20S and 20S-PA200 Proteasome Complexes
Ana Toste Rego et al.
MOLECULAR CELL (2019)
Contribution of proteasome-catalyzed peptide cis-splicing to viral targeting by CD8+ T cells in HIV-1 infection
Wayne Paes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
An in silico-in vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients
Michele Mishto et al.
FRONTIERS IN IMMUNOLOGY (2019)
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
Ngoc Hieu Tran et al.
NATURE METHODS (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
GENCODE reference annotation for the human and mouse genomes
Adam Frankish et al.
NUCLEIC ACIDS RESEARCH (2019)
Mapping the MHC Class I-Spliced Immunopeptidome of Cancer Cells
Juliane Liepe et al.
CANCER IMMUNOLOGY RESEARCH (2019)
Limitations of alignment-free tools in total RNA-seq quantification
Douglas C. Wu et al.
BMC GENOMICS (2018)
Why do proteases mess up with antigen presentation by re-shuffling antigen sequences?
Juliane Liepe et al.
CURRENT OPINION IN IMMUNOLOGY (2018)
Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-1 Ligandome
Roman Mylonas et al.
MOLECULAR & CELLULAR PROTEOMICS (2018)
Noncoding regions are the main source of targetable tumor-specific antigens
Celine M. Laumont et al.
SCIENCE TRANSLATIONAL MEDICINE (2018)
A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands
Pouya Faridi et al.
SCIENCE IMMUNOLOGY (2018)
Unbiased Identification of T-Cell Receptors Targeting Immunodominant Peptide-MHC Complexes for T-Cell Receptor Immunotherapy
Felix K. M. Lorenz et al.
HUMAN GENE THERAPY (2017)
Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction
Jennifer G. Abelin et al.
IMMUNITY (2017)
Salmon provides fast and bias-aware quantification of transcript expression
Rob Patro et al.
NATURE METHODS (2017)
De novo peptide sequencing by deep learning
Ngoc Hieu Tran et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Post-Translational Peptide Splicing and T Cell Responses
Michele Mishto et al.
TRENDS IN IMMUNOLOGY (2017)
Multi-level Strategy for Identifying Proteasome-Catalyzed Spliced Epitopes Targeted by CD8+ T Cells during Bacterial Infection
Anouk C. M. Platteel et al.
CELL REPORTS (2017)
CD8+ T cells of Listeria monocytogenes-infected mice recognize both linear and spliced proteasome products
Anouk C. M. Platteel et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2016)
Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0
Matthew The et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2016)
Pathogenic CD4 T cells in type 1 diabetes recognize epitopes formed by peptide fusion
Thomas Delong et al.
SCIENCE (2016)
A large fraction of HLA class I ligands are proteasome-generated spliced peptides
Juliane Liepe et al.
SCIENCE (2016)
Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames
Celine M. Laumont et al.
NATURE COMMUNICATIONS (2016)
Proteasomes generate spliced epitopes by two different mechanisms and as efficiently as non-spliced epitopes
F. Ebstein et al.
SCIENTIFIC REPORTS (2016)
Definition of Proteasomal Peptide Splicing Rules for High-Efficiency Spliced Peptide Presentation by MHC Class I Molecules
Celia R. Berkers et al.
JOURNAL OF IMMUNOLOGY (2015)
Deciphering preferential interactions within supramolecular protein complexes: the proteasome case
Bertrand Fabre et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
Quantitative time-resolved analysis reveals intricate, differential regulation of standard- and immuno-proteasomes
Juliane Liepe et al.
ELIFE (2015)
Proteasome isoforms exhibit only quantitative differences in cleavage and epitope generation
Michele Mishto et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2014)
Identification and characterisation of peptide binding motifs of six autoimmune disease-associated human leukocyte antigen-class I molecules including HLA-B*39:06
M. Eichmann et al.
TISSUE ANTIGENS (2014)
Analysis of the Processing of Seven Human Tumor Antigens by Intermediate Proteasomes
Benoit Guillaume et al.
JOURNAL OF IMMUNOLOGY (2012)
Driving Forces of Proteasome-catalyzed Peptide Splicing in Yeast and Humans
Michele Mishto et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
An antigenic peptide produced by reverse splicing and double asparagine deamidation
Alexandre Dalet et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Splicing of Distant Peptide Fragments Occurs in the Proteasome by Transpeptidation and Produces the Spliced Antigenic Peptide Derived from Fibroblast Growth Factor-5
Alexandre Dalet et al.
JOURNAL OF IMMUNOLOGY (2010)
The 20S Proteasome Splicing Activity Discovered by SpliceMet
Juliane Liepe et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Semi-supervised learning for peptide identification from shotgun proteomics datasets
Lukas Kall et al.
NATURE METHODS (2007)
An antigenic peptide produced by peptide splicing in the proteasome
N Vigneron et al.
SCIENCE (2004)
Immune recognition of a human renal cancer antigen through post-translational protein splicing
K Hanada et al.
NATURE (2004)
Share Paper
