4.6 Article

Detecting selection using extended haplotype homozygosity (EHH)-based statistics in unphased or unpolarized data

Related references

Note: Only part of the references are listed.
Article Genetics & Heredity

Selective Sweeps Under Dominance and Inbreeding

Matthew Hartfield et al.

G3-GENES GENOMES GENETICS (2020)

Article Biochemistry & Molecular Biology

A Likelihood Approach for Uncovering Selective Sweep Signatures from Haplotype Data

Alexandre M. Harris et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Biochemistry & Molecular Biology

Why and when was lactase persistence selected for? Insights from Central Asian herders and ancient DNA

Laure Segurel et al.

PLOS BIOLOGY (2020)

Article Anthropology

Shades of complexity: New perspectives on the evolution and genetic architecture of human skin

Ellen E. Quillen et al.

AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY (2019)

Article Genetics & Heredity

Selective Sweeps

Wolfgang Stephan

GENETICS (2019)

Article Biochemistry & Molecular Biology

Ensembl 2018

Daniel R. Zerbino et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Zoology

Detecting signatures of positive selection in non-model species using genomic data

Hannah Weigand et al.

ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2018)

Article Biochemistry & Molecular Biology

REHH 2.0: a reimplementation of the R package REHH to detect positive selection from haplotype structure

Mathieu Gautier et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Article Biochemistry & Molecular Biology

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

Julio Rozas et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Article Multidisciplinary Sciences

Parental influence on human germline de novo mutations in 1,548 trios from Iceland

Hakon Jonsson et al.

NATURE (2017)

Review Genetics & Heredity

The Evolutionary Interplay between Adaptation and Self-Fertilization

Matthew Hartfield et al.

TRENDS IN GENETICS (2017)

Article Biochemical Research Methods

SWEEPFINDER2: increased sensitivity, robustness and flexibility

Michael DeGiorgio et al.

BIOINFORMATICS (2016)

Article Cell Biology

The mutation rate in human evolution and demographic inference

Aylwyn Scally

CURRENT OPINION IN GENETICS & DEVELOPMENT (2016)

Article Biochemical Research Methods

Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes

Jerome Kelleher et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets

Colin A. Maclean et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Multidisciplinary Sciences

A global reference for human genetic variation

David M. Altshuler et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure

Anna Ferrer-Admetlla et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

Zachary A. Szpiech et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

Bastian Pfeifer et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Review Genetics & Heredity

Detecting Natural Selection in Genomic Data

Joseph J. Vitti et al.

ANNUAL REVIEW OF GENETICS, VOL 47 (2013)

Article Biochemistry & Molecular Biology

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

Pavlos Pavlidis et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemical Research Methods

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

Mathieu Gautier et al.

BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

Classic Selective Sweeps Were Rare in Recent Human Evolution

Ryan D. Hernandez et al.

SCIENCE (2011)

Article Multidisciplinary Sciences

Integrating common and rare genetic variation in diverse human populations

David M. Altshuler et al.

NATURE (2010)

Review Biology

Genome-wide scans for footprints of natural selection

Taras K. Oleksyk et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)

Article Genetics & Heredity

Frequency Spectrum Neutrality Tests: One for All and All for One

Guillaume Achaz

GENETICS (2009)

Review Ecology

Evolution of the genomic rate of recombination in mammals

Beth L. Dumont et al.

EVOLUTION (2008)

Article Multidisciplinary Sciences

Genome-wide detection and characterization of positive selection in human populations

Pardis C. Sabeti et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

Context dependence, ancestral misidentification, and spurious signatures of natural selection

Ryan D. Hernandez et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

A new approach for using genome scans to detect recent positive selection in the human genome

Kun Tang et al.

PLOS BIOLOGY (2007)

Article Biochemical Research Methods

msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots

Garrett Hellenthal et al.

BIOINFORMATICS (2007)

Article Genetics & Heredity

Convergent adaptation of human lactase persistence in Africa and Europe

Sarah A. Tishkoff et al.

NATURE GENETICS (2007)

Review Multidisciplinary Sciences

Positive natural selection in the human lineage

P. C. Sabeti et al.

SCIENCE (2006)

Correction Biochemistry & Molecular Biology

A map of recent positive selection in the human genome (vol 4, pg 154, 2006)

BF Voight et al.

PLOS BIOLOGY (2006)

Article Biochemistry & Molecular Biology

A map of recent positive selection in the human genome

BF Voight et al.

PLOS BIOLOGY (2006)

Article Multidisciplinary Sciences

Global landscape of recent inferred Darwinian selection for Homo sapiens

ET Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans

RL Lamason et al.

SCIENCE (2005)

Article Biochemistry & Molecular Biology

Genomic scans for selective sweeps using SNP data

R Nielsen et al.

GENOME RESEARCH (2005)

Article Multidisciplinary Sciences

The fine-scale structure of recombination rate variation in the human genome

GAT McVean et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

Interrogating a high-density SNP map for signatures of natural selection

JM Akey et al.

GENOME RESEARCH (2002)

Article Multidisciplinary Sciences

Detecting recent positive selection in the human genome from haplotype structure

PC Sabeti et al.

NATURE (2002)

Article Genetics & Heredity

Identification of a variant associated with adult-type hypolactasia

NS Enattah et al.

NATURE GENETICS (2002)